TESMIN (testis expressed metallothionein like protein) - Rat Genome Database

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Gene: TESMIN (testis expressed metallothionein like protein) Chlorocebus sabaeus
Analyze
Symbol: TESMIN
Name: testis expressed metallothionein like protein
RGD ID: 18607920
Description: INVOLVED IN male meiotic nuclear division (inferred); regulation of DNA-templated transcription (inferred); spermatogenesis (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); intellectual disability (ortholog); Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ortholog); FOUND IN cytoplasm (inferred); male germ cell nucleus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115,788,231 - 5,834,900 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl15,789,096 - 5,834,873 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038103,069,512 - 103,117,861 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TESMIN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115,788,231 - 5,834,900 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl15,789,096 - 5,834,873 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038103,069,512 - 103,117,861 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TESMIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,704,796 - 68,751,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1168,707,440 - 68,751,520 (-)EnsemblGRCh38hg38GRCh38
GRCh371168,474,908 - 68,518,988 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361168,231,484 - 68,275,564 (-)NCBINCBI36Build 36hg18NCBI36
Build 341168,231,485 - 68,275,578NCBI
Celera1165,811,526 - 65,855,203 (-)NCBICelera
Cytogenetic Map11q13.3NCBI
HuRef1164,811,141 - 64,855,211 (-)NCBIHuRef
CHM1_11168,358,653 - 68,402,738 (-)NCBICHM1_1
T2T-CHM13v2.01168,710,920 - 68,757,642 (-)NCBIT2T-CHM13v2.0
Tesmin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,438,857 - 3,457,823 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,438,857 - 3,457,823 (+)EnsemblGRCm39 Ensembl
GRCm38193,388,857 - 3,407,823 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,388,857 - 3,407,823 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,388,869 - 3,407,785 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,389,379 - 3,407,785 (+)NCBIMGSCv36mm8
Celera193,258,339 - 3,277,269 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.15NCBI
Tesmin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,059,414 - 210,077,704 (+)NCBIGRCr8
mRatBN7.21200,629,688 - 200,648,434 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1200,630,144 - 200,648,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,003,342 - 209,021,647 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,092,104 - 216,110,394 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01208,766,312 - 208,784,602 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,632,764 - 218,651,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,632,764 - 218,651,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,500,671 - 225,518,961 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41205,916,071 - 205,934,347 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11206,069,523 - 206,087,799 (+)NCBI
Celera1198,185,595 - 198,203,885 (+)NCBICelera
Cytogenetic Map1q42NCBI
Tesmin
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,160,711 - 17,199,701 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,161,396 - 17,199,649 (+)NCBIChiLan1.0ChiLan1.0
TESMIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2969,662,033 - 69,706,897 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11170,705,232 - 70,750,145 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01163,793,626 - 63,837,709 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11167,097,731 - 67,141,864 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1167,097,731 - 67,141,863 (-)Ensemblpanpan1.1panPan2
TESMIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,191,265 - 49,232,030 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,191,211 - 49,230,576 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1847,800,783 - 47,841,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01850,106,513 - 50,146,806 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11849,327,176 - 49,367,848 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01848,900,996 - 48,941,606 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01849,694,827 - 49,734,802 (+)NCBIUU_Cfam_GSD_1.0
Tesmin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,094,761 - 5,118,684 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365991,537,307 - 1,560,960 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365991,537,307 - 1,560,971 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TESMIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl24,297,952 - 4,340,968 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.124,296,855 - 4,340,970 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.222,877,090 - 2,921,172 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tesmin
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476718,162,578 - 18,201,761 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476718,162,971 - 18,201,190 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
37 36 18 34 34 21 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008021186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000007096   ⟹   ENSCSAP00000005286
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl15,789,096 - 5,834,873 (+)Ensembl
RefSeq Acc Id: XM_008021186   ⟹   XP_008019377
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.115,788,231 - 5,834,900 (+)NCBI
Vero_WHO_p1.0NW_023666038103,069,512 - 103,117,861 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008019377 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005286
  ENSCSAP00000005286.1
RefSeq Acc Id: XP_008019377   ⟸   XM_008021186
- UniProtKB: A0A0D9R9J7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000005286   ⟸   ENSCSAT00000007096


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009039 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007096.1 UniProtKB/TrEMBL
InterPro CRC UniProtKB/TrEMBL
  Lin-54_fam UniProtKB/TrEMBL
  Tesmin/TSO1-like_CXC UniProtKB/TrEMBL
KEGG Report csab:103248615 UniProtKB/TrEMBL
NCBI Gene TESMIN ENTREZGENE
PANTHER PTHR12446 UniProtKB/TrEMBL
  TESMIN UniProtKB/TrEMBL
Pfam TCR UniProtKB/TrEMBL
PROSITE CRC UniProtKB/TrEMBL
SMART CXC UniProtKB/TrEMBL
UniProt A0A0D9R9J7 ENTREZGENE, UniProtKB/TrEMBL