MEIG1 (meiosis/spermiogenesis associated 1) - Rat Genome Database

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Gene: MEIG1 (meiosis/spermiogenesis associated 1) Chlorocebus sabaeus
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Symbol: MEIG1
Name: meiosis/spermiogenesis associated 1
RGD ID: 18600796
Description: INVOLVED IN manchette assembly (ortholog); protein localization (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); severe combined immunodeficiency with sensitivity to ionizing radiation (ortholog); FOUND IN cytosol (inferred); manchette (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103237930; meiosis expressed gene 1 protein homolog; uncharacterized LOC103237930; uncharacterized protein LOC103237930
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1914,974,886 - 14,993,903 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl914,987,172 - 14,993,926 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605120,514,802 - 20,534,254 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
manchette  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MEIG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1914,974,886 - 14,993,903 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl914,987,172 - 14,993,926 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605120,514,802 - 20,534,254 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MEIG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381014,954,228 - 14,988,050 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1014,959,388 - 14,988,050 (+)EnsemblGRCh38hg38GRCh38
GRCh371015,001,387 - 15,030,049 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361015,041,444 - 15,054,856 (+)NCBINCBI36Build 36hg18NCBI36
Celera1014,930,330 - 14,943,726 (+)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1014,911,628 - 14,925,464 (+)NCBIHuRef
CHM1_11015,001,575 - 15,014,968 (+)NCBICHM1_1
T2T-CHM13v2.01014,968,185 - 15,002,020 (+)NCBIT2T-CHM13v2.0
Meig1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3923,410,080 - 3,423,685 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl23,410,080 - 3,423,685 (-)EnsemblGRCm39 Ensembl
GRCm3823,409,043 - 3,422,648 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl23,409,043 - 3,422,648 (-)EnsemblGRCm38mm10GRCm38
MGSCv3723,326,315 - 3,339,920 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3623,326,315 - 3,339,920 (-)NCBIMGSCv36mm8
Celera23,359,961 - 3,373,566 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map21.92NCBI
Meig1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81779,718,630 - 79,737,604 (+)NCBIGRCr8
mRatBN7.21774,810,791 - 74,828,433 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,814,632 - 74,828,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1778,281,936 - 78,294,786 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01782,116,123 - 82,130,177 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01776,165,276 - 76,178,126 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01778,813,656 - 78,829,411 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1778,817,529 - 78,829,411 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01780,457,475 - 80,474,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41785,934,114 - 85,946,695 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1774,195,958 - 74,208,336 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Meig1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542919,433,900 - 19,444,360 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542919,435,004 - 19,444,833 (-)NCBIChiLan1.0ChiLan1.0
MEIG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2827,484,575 - 27,497,892 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11027,489,902 - 27,503,219 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01014,957,096 - 14,975,737 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MEIG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1221,675,003 - 21,684,020 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl221,675,012 - 21,679,456 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha218,788,317 - 18,797,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0221,976,437 - 21,985,431 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl221,976,446 - 21,980,890 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1219,176,760 - 19,185,746 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0220,011,698 - 20,020,688 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0220,638,304 - 20,647,309 (-)NCBIUU_Cfam_GSD_1.0
Meig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093446,954,570 - 6,962,953 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366131,508,999 - 1,513,501 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366131,508,975 - 1,513,769 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEIG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1046,786,841 - 46,800,323 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11046,771,820 - 46,800,955 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21051,524,891 - 51,533,653 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Meig1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624805533,089 - 547,489 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624805533,195 - 547,600 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000011030   ⟹   ENSCSAP00000009114
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl914,987,172 - 14,993,926 (+)Ensembl
RefSeq Acc Id: XM_008002351   ⟹   XP_008000542
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1914,980,013 - 14,993,903 (+)NCBI
Vero_WHO_p1.0NW_02366605120,520,082 - 20,534,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002352   ⟹   XP_008000543
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1914,974,911 - 14,993,903 (+)NCBI
Vero_WHO_p1.0NW_02366605120,514,983 - 20,534,253 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002353   ⟹   XP_008000544
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1914,980,701 - 14,993,903 (+)NCBI
Vero_WHO_p1.0NW_02366605120,520,330 - 20,534,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002354   ⟹   XP_008000545
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1914,974,886 - 14,993,903 (+)NCBI
Vero_WHO_p1.0NW_02366605120,514,802 - 20,534,253 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037983352   ⟹   XP_037839280
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605120,515,016 - 20,534,253 (+)NCBI
RefSeq Acc Id: XM_037983353   ⟹   XP_037839281
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605120,518,674 - 20,534,254 (+)NCBI
RefSeq Acc Id: XP_008000545   ⟸   XM_008002354
- UniProtKB: A0A0D9RKH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008000543   ⟸   XM_008002352
- UniProtKB: A0A0D9RKH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008000542   ⟸   XM_008002351
- UniProtKB: A0A0D9RKH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008000544   ⟸   XM_008002353
- UniProtKB: A0A0D9RKH5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000009114   ⟸   ENSCSAT00000011030
RefSeq Acc Id: XP_037839280   ⟸   XM_037983352
- UniProtKB: A0A0D9RKH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037839281   ⟸   XM_037983353
- UniProtKB: A0A0D9RKH5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012937 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011030.1 UniProtKB/TrEMBL
InterPro Meiosis-expressed_gene_1 UniProtKB/TrEMBL
KEGG Report csab:103237929 UniProtKB/TrEMBL
NCBI Gene MEIG1 ENTREZGENE
PANTHER MEIOSIS EXPRESSED GENE 1 PROTEIN HOMOLOG UniProtKB/TrEMBL
  PTHR17008 UniProtKB/TrEMBL
Pfam Meiosis_expr UniProtKB/TrEMBL
UniProt A0A0D9RKH5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 MEIG1  meiosis/spermiogenesis associated 1  LOC103237930  uncharacterized LOC103237930  Data merged from RGD:18648419 737654 PROVISIONAL