ZSCAN29 (zinc finger and SCAN domain containing 29) - Rat Genome Database

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Gene: ZSCAN29 (zinc finger and SCAN domain containing 29) Chlorocebus sabaeus
Analyze
Symbol: ZSCAN29
Name: zinc finger and SCAN domain containing 29
RGD ID: 18597890
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and SCAN domain-containing protein 29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,631,076 - 39,643,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2639,630,611 - 39,643,756 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048101,369,933 - 101,382,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZSCAN29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12639,631,076 - 39,643,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2639,630,611 - 39,643,756 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048101,369,933 - 101,382,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZSCAN29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,358,175 - 43,371,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,358,172 - 43,371,043 (-)EnsemblGRCh38hg38GRCh38
GRCh371543,650,373 - 43,663,241 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361541,437,662 - 41,449,550 (-)NCBINCBI36Build 36hg18NCBI36
Celera1520,421,021 - 20,432,909 (-)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1520,498,826 - 20,510,297 (-)NCBIHuRef
CHM1_11543,769,036 - 43,780,929 (-)NCBICHM1_1
T2T-CHM13v2.01541,165,501 - 41,178,380 (-)NCBIT2T-CHM13v2.0
Zscan29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,988,754 - 121,001,623 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,988,754 - 121,001,606 (-)EnsemblGRCm39 Ensembl
GRCm382121,158,273 - 121,171,148 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,158,273 - 121,171,125 (-)EnsemblGRCm38mm10GRCm38
MGSCv372120,986,432 - 120,996,885 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,852,137 - 120,862,590 (-)NCBIMGSCv36mm8
Celera2122,312,803 - 122,323,162 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
Zscan29-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,589,900 - 128,594,043 (-)NCBIGRCr8
mRatBN7.23108,136,468 - 108,140,431 (-)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map3q35NCBI
Zscan29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554169,921,036 - 9,933,620 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554169,921,036 - 9,933,622 (-)NCBIChiLan1.0ChiLan1.0
ZSCAN29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21632,612,752 - 32,622,522 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11536,771,934 - 36,784,254 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01522,322,316 - 22,331,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11540,476,956 - 40,486,653 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1540,476,956 - 40,486,653 (-)Ensemblpanpan1.1panPan2
ZSCAN29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13010,217,818 - 10,226,355 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3010,217,823 - 10,225,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3010,274,372 - 10,285,214 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03010,351,589 - 10,362,444 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3010,351,621 - 10,362,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13010,268,171 - 10,279,010 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03010,389,263 - 10,400,109 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03010,509,207 - 10,520,051 (-)NCBIUU_Cfam_GSD_1.0
Zscan29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864088,684,423 - 88,693,657 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364716,532,707 - 6,541,418 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364716,532,497 - 6,541,706 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1128,084,067 - 128,094,617 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11128,084,065 - 128,097,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21142,940,401 - 142,953,527 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Zscan29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480410,469,454 - 10,483,180 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480410,467,711 - 10,483,200 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 17 29
Low 19 20 31
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000007147   ⟹   ENSCSAP00000005334
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2639,630,611 - 39,643,756 (+)Ensembl
RefSeq Acc Id: XM_008016858   ⟹   XP_008015049
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12639,631,164 - 39,643,281 (+)NCBI
Vero_WHO_p1.0NW_023666048101,369,933 - 101,382,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008016860   ⟹   XP_008015051
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12639,631,076 - 39,643,281 (+)NCBI
Vero_WHO_p1.0NW_023666048101,369,933 - 101,382,822 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008016861   ⟹   XP_008015052
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12639,631,894 - 39,643,281 (+)NCBI
Vero_WHO_p1.0NW_023666048101,369,933 - 101,381,593 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008015049 (Get FASTA)   NCBI Sequence Viewer  
  XP_008015051 (Get FASTA)   NCBI Sequence Viewer  
  XP_008015052 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005334.1
Reference Protein Sequences
RefSeq Acc Id: XP_008015051   ⟸   XM_008016860
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R9P5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008015049   ⟸   XM_008016858
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R9P5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008015052   ⟸   XM_008016861
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000005334   ⟸   ENSCSAT00000007147


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009079 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007147.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Myb_DNA-bind_4 UniProtKB/TrEMBL
  SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report csab:103245744 UniProtKB/TrEMBL
NCBI Gene ZSCAN29 ENTREZGENE
PANTHER PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam Myb_DNA-bind_4 UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9R9P5 ENTREZGENE, UniProtKB/TrEMBL