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Gene: TMEM53 (transmembrane protein 53) Chlorocebus sabaeus

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Symbol:

TMEM53

Name:

transmembrane protein 53

RGD ID:

18586639

Description:

INVOLVED IN negative regulation of BMP signaling pathway (inferred); negative regulation of ossification (inferred); negative regulation of osteoblast differentiation (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); craniotubular dysplasia Ikegawa type (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN membrane (inferred); nuclear membrane (inferred); nuclear outer membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	88,111,228 - 88,131,952 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	88,111,231 - 88,134,124 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	28,790,922 - 28,812,672 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

craniotubular dysplasia Ikegawa type (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of BMP signaling pathway (IEA)

negative regulation of ossification (IEA)

negative regulation of osteoblast differentiation (IEA)

regulation of nucleocytoplasmic transport (IEA)

Cellular Component

membrane (IEA)

nuclear membrane (IEA)

nuclear outer membrane (IEA)

References

Genomics

Comparative Map Data

TMEM53
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	88,111,228 - 88,131,952 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	88,111,231 - 88,134,124 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	28,790,922 - 28,812,672 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TMEM53
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	44,653,247 - 44,674,481 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	44,635,238 - 44,674,481 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	45,118,919 - 45,140,153 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	44,892,088 - 44,912,686 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	43,402,390 - 43,422,988 (-)	NCBI		Celera
Cytogenetic Map	1	p34.1	NCBI
HuRef	1	43,233,694 - 43,254,292 (-)	NCBI		HuRef
CHM1_1	1	45,235,410 - 45,256,009 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	44,524,186 - 44,545,427 (-)	NCBI		T2T-CHM13v2.0

Tmem53
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	117,109,148 - 117,125,785 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	117,109,148 - 117,125,779 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	117,251,951 - 117,268,588 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	117,251,951 - 117,268,582 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	116,924,594 - 116,941,185 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	116,749,921 - 116,766,512 (+)	NCBI		MGSCv36	mm8
Celera	4	115,981,969 - 115,998,698 (+)	NCBI		Celera
Cytogenetic Map	4	D1	NCBI
cM Map	4	53.43	NCBI

Tmem53
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	135,958,344 - 135,974,258 (+)	NCBI		GRCr8
mRatBN7.2	5	130,721,780 - 130,737,692 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	130,721,659 - 130,737,692 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	133,345,225 - 133,360,784 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	135,099,823 - 135,115,382 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	135,122,252 - 135,137,811 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	136,112,417 - 136,127,976 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	136,112,417 - 136,127,976 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	139,905,905 - 139,921,464 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	137,559,894 - 137,575,740 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	137,565,154 - 137,580,579 (+)	NCBI
Celera	5	129,243,073 - 129,258,614 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Tmem53
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	13,552,922 - 13,577,528 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	13,552,963 - 13,577,528 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM53
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	182,134,506 - 182,157,787 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	181,275,852 - 181,299,184 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	43,955,734 - 43,977,107 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	45,322,209 - 45,343,326 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	45,305,359 - 45,343,109 (-)	Ensembl	panpan1.1		panPan2

TMEM53
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	15,640,232 - 15,661,829 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	15,640,342 - 15,678,994 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	15,760,354 - 15,781,933 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	15,791,873 - 15,813,549 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	15,791,913 - 15,830,728 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	15,592,995 - 15,614,578 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	15,660,073 - 15,681,673 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	15,733,773 - 15,755,366 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	60,071,166 - 60,090,112 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	25,896,980 - 25,914,963 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	25,897,032 - 25,914,873 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM53
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	166,645,098 - 166,680,654 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	166,645,103 - 166,664,382 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	154,094,633 - 154,112,799 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Tmem53
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624906	544,485 - 580,001 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624906	528,595 - 579,894 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007979002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007979003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037998597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037998601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000017333 ⟹ ENSCSAP00000016814

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	88,111,231 - 88,134,124 (+)	Ensembl

RefSeq Acc Id:

XM_007979002 ⟹ XP_007977193

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	88,111,228 - 88,131,952 (+)	NCBI
Vero_WHO_p1.0	NW_023666033	28,790,922 - 28,812,672 (-)	NCBI

Sequence:

show sequence

GTGATTGGGCGGCGCCCAGGAGGCGCCCGGGTGAGGCAAGGGTGCGCAAGCTAGAGTTCCGGCT
GGAGGCCCGTGCTCGGGGCCGGCGCCTTCACCATGGGCTCGGCAGAGCTGGACTACACCATCGA
GATCCCAGATCAACCCTGCTGGAGCCAGAAGAACATCCCCAGCCCAGGTGGGAAGGAGGCAGAA
ACTCGGCAGCCTGTGGTGATTCTCTTGGGCTGGGGTGGCTGCAAGGACAAGAACCTTGCCAAGT
ACAGTGCCATCTACCACAAAAGGGGCTGCATTGTAATCCGATACACAGCCCCGTGGCACATGGT
CTTCTTCTCCGAGTCGCTGGGCATCCCTTCACTTCGTGTTTTGGCCCAGAAGCTGCTCGAGCTG
CTCTTTGATTATGAGATTGAGAAGGAGCCCCTGCTCTTCCATGTCTTCAGCAACGGTGGCGTCA
TGCTGTACCGCTACGTGCTGGAGCTCCTGCAGACCCGTCGCTTCTGTCACCTGCGTGTGGTGGG
CACCATCTTTGACAGCGCTCCTGGTGACAGCAACCTGGTAGGGGCTCTGCGGGCCCTGGCAGCC
ATCCTGGAGCGCCGGGCTGCCATGCTGCGCCTGTTGCTGCTGGTGGCCTTTGCCCTGGTGGTTG
TCCTGTTCCACGTCCTGCTTGCTCCCATCACAGCCCTCTTCCACACCCACTTCTATGACAGGCT
ACAGGACGCGGGCTCTCGCTGGCCTGAACTTTACCTCTACTCAAGGGCTGACGAAGTAGTCCCG
GCCAGAGACGTAGAACGCATGGTGGAGGCACGCCTGGCACGTCGGGTCCTGGCACGTTCTGTGG
ACTTCGTGTCATCTGCACACGTCAGCCACCTCCGTGACTACCCTACTTACTACACAAGCCTCTG
TGTCGACTTCATGCGCAACTGTGTCCACTGCTGAGGTCATTGCTCCACCTTACCTCTGCTCCAG
AAATAAATGTCTGACGCCTCCCCACAACCTGCATCTGTGGGGCACTCTTCTGGTTCAACTCTCT
GTAGCCCTTTGGGACTTTGCAGTCCCCTAAGTAGAAAATTCCTATGGGCCTGTCTCCTGGGGGC
CTCCGTCTGCTGGTGGTCTGCTTACCACAGAATCCTAAAGGGCAGGAGTGCCTGGGCATGTGTC
TGTGGGAGCCCTGTAGTCATTTGTCTTTGGACGAGCGCAACAGTCAGGCTGCCGATTCCTGTGG
CATGCAGGCTGGAAAGGTTGACAAACGGAGGGGGTTGTTGAGGGTGAGCCCTAGTTGATTTTTT
AAAATTTAAACTGTGGTAAGAACATTTAACATGA

hide sequence

RefSeq Acc Id:

XM_007979003 ⟹ XP_007977194

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	88,111,435 - 88,131,948 (+)	NCBI
Vero_WHO_p1.0	NW_023666033	28,790,922 - 28,812,303 (-)	NCBI

Sequence:

show sequence

GTGGGTTGCGAGCGCAGCTGTAGCCCCGCCCCCCATGCGGCCCCGCCCTCCCGCGGGCCGCCCC
CTCATAGGGTCCGGCAGGTCCTAGTCTTAGAGAGGCTCAGAGAGCCCCGCCCCTCATAAGCCCC
GCCCCAGAGTGTTCCTCCCTGGCGAGCCCCGCCTCTGCCCCGAGTCAGCTGCTCGCTTGGGACC
CCTTTTTTTTTGTCTTTCCTGTCCGGGGTGCTCAGGTCCATGCCCTTTAATCACTTATCATAGC
TGAAGGCTGCCGAAAGCTGGATCCCTTCTGATTCCTTTGTTTGGGATTGGGCTTCCCACATCTA
GCCTTTCTTCGGCGGTTATGGCTATCACTTATTATTTTCCCGAAGGCGTGGAAGGGGGGCCTCG
CGGGGTCACCGATCCTCGCAGAAGCCCGGGACTCAGAACCCTTAGCCGTCCCTCTCCACTCTTC
TTGGCAGTGGTTAACAGTGCAGTCTCTGCCGTCAGGTAGAACTCGACAGAAATCCTGACTCCTT
CCTTTAGGAGCTGGATGACCTTTGAGAACATCCCCAGCCCAGGTGGGAAGGAGGCAGAAACTCG
GCAGCCTGTGGTGATTCTCTTGGGCTGGGGTGGCTGCAAGGACAAGAACCTTGCCAAGTACAGT
GCCATCTACCACAAAAGGGGCTGCATTGTAATCCGATACACAGCCCCGTGGCACATGGTCTTCT
TCTCCGAGTCGCTGGGCATCCCTTCACTTCGTGTTTTGGCCCAGAAGCTGCTCGAGCTGCTCTT
TGATTATGAGATTGAGAAGGAGCCCCTGCTCTTCCATGTCTTCAGCAACGGTGGCGTCATGCTG
TACCGCTACGTGCTGGAGCTCCTGCAGACCCGTCGCTTCTGTCACCTGCGTGTGGTGGGCACCA
TCTTTGACAGCGCTCCTGGTGACAGCAACCTGGTAGGGGCTCTGCGGGCCCTGGCAGCCATCCT
GGAGCGCCGGGCTGCCATGCTGCGCCTGTTGCTGCTGGTGGCCTTTGCCCTGGTGGTTGTCCTG
TTCCACGTCCTGCTTGCTCCCATCACAGCCCTCTTCCACACCCACTTCTATGACAGGCTACAGG
ACGCGGGCTCTCGCTGGCCTGAACTTTACCTCTACTCAAGGGCTGACGAAGTAGTCCCGGCCAG
AGACGTAGAACGCATGGTGGAGGCACGCCTGGCACGTCGGGTCCTGGCACGTTCTGTGGACTTC
GTGTCATCTGCACACGTCAGCCACCTCCGTGACTACCCTACTTACTACACAAGCCTCTGTGTCG
ACTTCATGCGCAACTGTGTCCACTGCTGAGGTCATTGCTCCACCTTACCTCTGCTCCAGAAATA
AATGTCTGACGCCTCCCCACAACCTGCATCTGTGGGGCACTCTTCTGGTTCAACTCTCTGTAGC
CCTTTGGGACTTTGCAGTCCCCTAAGTAGAAAATTCCTATGGGCCTGTCTCCTGGGGGCCTCCG
TCTGCTGGTGGTCTGCTTACCACAGAATCCTAAAGGGCAGGAGTGCCTGGGCATGTGTCTGTGG
GAGCCCTGTAGTCATTTGTCTTTGGACGAGCGCAACAGTCAGGCTGCCGATTCCTGTGGCATGC
AGGCTGGAAAGGTTGACAAACGGAGGGGGTTGTTGAGGGTGAGCCCTAGTTGATTTTTTAAAAT
TTAAACTGTGGTAAGAACATTTAAC

hide sequence

RefSeq Acc Id:

XM_037998597 ⟹ XP_037854525

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	28,790,922 - 28,811,788 (-)	NCBI

RefSeq Acc Id:

XM_037998601 ⟹ XP_037854529

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	28,790,922 - 28,812,535 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007977193	(Get FASTA)	NCBI Sequence Viewer
	XP_007977194	(Get FASTA)	NCBI Sequence Viewer
	XP_037854525	(Get FASTA)	NCBI Sequence Viewer
	XP_037854529	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016814.1

RefSeq Acc Id:	XP_007977193 ⟸ XM_007979002
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S7H5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007977194 ⟸ XM_007979003
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S7H5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000016814 ⟸ ENSCSAT00000017333

RefSeq Acc Id:	XP_037854529 ⟸ XM_037998601
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037854525 ⟸ XM_037998597
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001200	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017333.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1820	UniProtKB/TrEMBL
InterPro	AB_hydrolase	UniProtKB/TrEMBL
	DUF829_TMEM53	UniProtKB/TrEMBL
KEGG Report	csab:103224936	UniProtKB/TrEMBL
NCBI Gene	TMEM53	ENTREZGENE
PANTHER	PTHR12265	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 53	UniProtKB/TrEMBL
Pfam	DUF829	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53474	UniProtKB/TrEMBL
UniProt	A0A0D9S7H5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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