TMEM53 (transmembrane protein 53) - Rat Genome Database

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Gene: TMEM53 (transmembrane protein 53) Canis lupus familiaris
Analyze
Symbol: TMEM53
Name: transmembrane protein 53
RGD ID: 12272440
Description: INVOLVED IN negative regulation of BMP signaling pathway (inferred); negative regulation of ossification (inferred); negative regulation of osteoblast differentiation (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); craniotubular dysplasia Ikegawa type (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN endomembrane system (inferred); membrane (inferred); nuclear membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11515,640,232 - 15,661,829 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1515,640,342 - 15,678,994 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1515,760,354 - 15,781,933 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01515,791,873 - 15,813,549 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1515,791,913 - 15,830,728 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11515,592,995 - 15,614,578 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01515,660,073 - 15,681,673 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01515,733,773 - 15,755,366 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
TMEM53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11515,640,232 - 15,661,829 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1515,640,342 - 15,678,994 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1515,760,354 - 15,781,933 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01515,791,873 - 15,813,549 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1515,791,913 - 15,830,728 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11515,592,995 - 15,614,578 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01515,660,073 - 15,681,673 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01515,733,773 - 15,755,366 (+)NCBIUU_Cfam_GSD_1.0
TMEM53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38144,653,247 - 44,674,481 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl144,635,238 - 44,674,481 (-)EnsemblGRCh38hg38GRCh38
GRCh37145,118,919 - 45,140,153 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,892,088 - 44,912,686 (-)NCBINCBI36Build 36hg18NCBI36
Celera143,402,390 - 43,422,988 (-)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef143,233,694 - 43,254,292 (-)NCBIHuRef
CHM1_1145,235,410 - 45,256,009 (-)NCBICHM1_1
T2T-CHM13v2.0144,524,186 - 44,545,427 (-)NCBIT2T-CHM13v2.0
Tmem53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,109,148 - 117,125,785 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,109,148 - 117,125,779 (+)EnsemblGRCm39 Ensembl
GRCm384117,251,951 - 117,268,588 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,251,951 - 117,268,582 (+)EnsemblGRCm38mm10GRCm38
MGSCv374116,924,594 - 116,941,185 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364116,749,921 - 116,766,512 (+)NCBIMGSCv36mm8
Celera4115,981,969 - 115,998,698 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.43NCBI
Tmem53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85135,958,344 - 135,974,258 (+)NCBIGRCr8
mRatBN7.25130,721,780 - 130,737,692 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5130,721,659 - 130,737,692 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5133,345,225 - 133,360,784 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05135,099,823 - 135,115,382 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05135,122,252 - 135,137,811 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05136,112,417 - 136,127,976 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,112,417 - 136,127,976 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05139,905,905 - 139,921,464 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45137,559,894 - 137,575,740 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15137,565,154 - 137,580,579 (+)NCBI
Celera5129,243,073 - 129,258,614 (+)NCBICelera
Cytogenetic Map5q36NCBI
Tmem53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546413,552,922 - 13,577,528 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546413,552,963 - 13,577,528 (+)NCBIChiLan1.0ChiLan1.0
TMEM53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,134,506 - 182,157,787 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11181,275,852 - 181,299,184 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,955,734 - 43,977,107 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1145,322,209 - 45,343,326 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl145,305,359 - 45,343,109 (-)Ensemblpanpan1.1panPan2
Tmem53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505860,071,166 - 60,090,112 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647425,896,980 - 25,914,963 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647425,897,032 - 25,914,873 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6166,645,098 - 166,680,654 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16166,645,103 - 166,664,382 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,094,633 - 154,112,799 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,111,228 - 88,131,952 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2088,111,231 - 88,134,124 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603328,790,922 - 28,812,672 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624906544,485 - 580,001 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624906528,595 - 579,894 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM53
299 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005629089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022428035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022428037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038495928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038687921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000037053   ⟹   ENSCAFP00000032501
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1515,640,342 - 15,661,825 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000046361   ⟹   ENSCAFP00000036595
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1515,640,342 - 15,678,972 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000088814   ⟹   ENSCAFP00000045884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1515,640,342 - 15,678,972 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000093453   ⟹   ENSCAFP00000045581
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1515,640,342 - 15,678,994 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845047587   ⟹   ENSCAFP00845037342
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1515,791,913 - 15,830,706 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845047608   ⟹   ENSCAFP00845037359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1515,791,913 - 15,830,706 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845047631   ⟹   ENSCAFP00845037377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1515,791,913 - 15,816,296 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845047672   ⟹   ENSCAFP00845037407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1515,791,991 - 15,830,728 (+)Ensembl
RefSeq Acc Id: XM_005629089   ⟹   XP_005629146
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11515,640,232 - 15,661,829 (+)NCBI
Dog10K_Boxer_Tasha1515,760,354 - 15,781,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022428035   ⟹   XP_022283743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11515,647,171 - 15,661,829 (+)NCBI
Dog10K_Boxer_Tasha1515,767,274 - 15,781,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038452174   ⟹   XP_038308102
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1515,760,376 - 15,781,933 (+)NCBI
RefSeq Acc Id: XM_038452175   ⟹   XP_038308103
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1515,760,376 - 15,781,933 (+)NCBI
RefSeq Acc Id: XM_038495924   ⟹   XP_038351852
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11515,592,995 - 15,614,578 (+)NCBI
RefSeq Acc Id: XM_038495926   ⟹   XP_038351854
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11515,593,017 - 15,614,578 (+)NCBI
RefSeq Acc Id: XM_038495927   ⟹   XP_038351855
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11515,593,017 - 15,614,578 (+)NCBI
RefSeq Acc Id: XM_038495928   ⟹   XP_038351856
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11515,599,927 - 15,614,578 (+)NCBI
RefSeq Acc Id: XM_038558298   ⟹   XP_038414226
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01515,733,773 - 15,755,366 (+)NCBI
RefSeq Acc Id: XM_038558299   ⟹   XP_038414227
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01515,733,795 - 15,755,366 (+)NCBI
RefSeq Acc Id: XM_038558300   ⟹   XP_038414228
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01515,733,795 - 15,755,366 (+)NCBI
RefSeq Acc Id: XM_038558301   ⟹   XP_038414229
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01515,740,695 - 15,755,366 (+)NCBI
RefSeq Acc Id: XM_038622188   ⟹   XP_038478116
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01515,660,073 - 15,681,673 (+)NCBI
RefSeq Acc Id: XM_038622189   ⟹   XP_038478117
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01515,660,095 - 15,681,673 (+)NCBI
RefSeq Acc Id: XM_038622190   ⟹   XP_038478118
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01515,660,095 - 15,681,673 (+)NCBI
RefSeq Acc Id: XM_038622191   ⟹   XP_038478119
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01515,667,036 - 15,681,673 (+)NCBI
RefSeq Acc Id: XM_038687918   ⟹   XP_038543846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01515,791,873 - 15,813,549 (+)NCBI
RefSeq Acc Id: XM_038687919   ⟹   XP_038543847
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01515,791,895 - 15,813,549 (+)NCBI
RefSeq Acc Id: XM_038687920   ⟹   XP_038543848
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01515,791,895 - 15,813,549 (+)NCBI
RefSeq Acc Id: XM_038687921   ⟹   XP_038543849
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01515,798,875 - 15,813,549 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005629146 (Get FASTA)   NCBI Sequence Viewer  
  XP_022283743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308102 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308103 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351852 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351854 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351855 (Get FASTA)   NCBI Sequence Viewer  
  XP_038351856 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414226 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414227 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414228 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414229 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478116 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478117 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478118 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478119 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543846 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543847 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543848 (Get FASTA)   NCBI Sequence Viewer  
  XP_038543849 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000036595.2
  ENSCAFP00000045581.1
  ENSCAFP00000045884.1
  ENSCAFP00000070928.1
  ENSCAFP00030023139.1
  ENSCAFP00030023329.1
  ENSCAFP00030023361.1
  ENSCAFP00030023395.1
  ENSCAFP00040007748.1
  ENSCAFP00040007827.1
  ENSCAFP00040007839.1
  ENSCAFP00040007877.1
  ENSCAFP00845037342.1
  ENSCAFP00845037359.1
  ENSCAFP00845037377
  ENSCAFP00845037377.1
  ENSCAFP00845037407.1
RefSeq Acc Id: XP_005629146   ⟸   XM_005629089
- Peptide Label: isoform X1
- UniProtKB: A0A8C0QF73 (UniProtKB/TrEMBL),   A0A8C0KXK5 (UniProtKB/TrEMBL),   A0A8I3PRA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022283743   ⟸   XM_022428035
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCAFP00000045884   ⟸   ENSCAFT00000088814
Ensembl Acc Id: ENSCAFP00000045581   ⟸   ENSCAFT00000093453
Ensembl Acc Id: ENSCAFP00000032501   ⟸   ENSCAFT00000037053
Ensembl Acc Id: ENSCAFP00000036595   ⟸   ENSCAFT00000046361
RefSeq Acc Id: XP_038351852   ⟸   XM_038495924
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038351855   ⟸   XM_038495927
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038351854   ⟸   XM_038495926
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038351856   ⟸   XM_038495928
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038478116   ⟸   XM_038622188
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038478118   ⟸   XM_038622190
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038478117   ⟸   XM_038622189
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038478119   ⟸   XM_038622191
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038543846   ⟸   XM_038687918
- Peptide Label: isoform X1
- UniProtKB: A0A8C0QF73 (UniProtKB/TrEMBL),   A0A8C0KXK5 (UniProtKB/TrEMBL),   A0A8I3PRA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038543848   ⟸   XM_038687920
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038543847   ⟸   XM_038687919
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038543849   ⟸   XM_038687921
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038308103   ⟸   XM_038452175
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038308102   ⟸   XM_038452174
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038414226   ⟸   XM_038558298
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KXK5 (UniProtKB/TrEMBL),   A0A8C0QF73 (UniProtKB/TrEMBL),   A0A8I3PRA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414228   ⟸   XM_038558300
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038414227   ⟸   XM_038558299
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038414229   ⟸   XM_038558301
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCAFP00845037359   ⟸   ENSCAFT00845047608
Ensembl Acc Id: ENSCAFP00845037377   ⟸   ENSCAFT00845047631
Ensembl Acc Id: ENSCAFP00845037407   ⟸   ENSCAFT00845047672
Ensembl Acc Id: ENSCAFP00845037342   ⟸   ENSCAFT00845047587

Promoters
RGD ID:13685917
Promoter ID:EPDNEW_C3985
Type:initiation region
Name:TMEM53_1
Description:transmembrane protein 53
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11515,640,301 - 15,640,361EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004791 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014309 UniProtKB/TrEMBL
  ENSCAFG00040004732 UniProtKB/TrEMBL
  ENSCAFG00845026997 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046361.3 UniProtKB/TrEMBL
  ENSCAFT00000088814.2 UniProtKB/TrEMBL
  ENSCAFT00000093453.2 UniProtKB/TrEMBL
  ENSCAFT00000101231.1 UniProtKB/TrEMBL
  ENSCAFT00030026507.1 UniProtKB/TrEMBL
  ENSCAFT00030026723.1 UniProtKB/TrEMBL
  ENSCAFT00030026758.1 UniProtKB/TrEMBL
  ENSCAFT00030026803.1 UniProtKB/TrEMBL
  ENSCAFT00040008927.1 UniProtKB/TrEMBL
  ENSCAFT00040009021.1 UniProtKB/TrEMBL
  ENSCAFT00040009034.1 UniProtKB/TrEMBL
  ENSCAFT00040009072.1 UniProtKB/TrEMBL
  ENSCAFT00845047587.1 UniProtKB/TrEMBL
  ENSCAFT00845047608.1 UniProtKB/TrEMBL
  ENSCAFT00845047631 ENTREZGENE
  ENSCAFT00845047631.1 UniProtKB/TrEMBL
  ENSCAFT00845047672.1 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  DUF829_TMEM53 UniProtKB/TrEMBL
KEGG Report cfa:482522 UniProtKB/TrEMBL
NCBI Gene TMEM53 ENTREZGENE
PANTHER PTHR12265 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 53 UniProtKB/TrEMBL
Pfam DUF829 UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A8C0KXK5 ENTREZGENE
  A0A8C0N8W0_CANLF UniProtKB/TrEMBL
  A0A8C0Q9U1_CANLF UniProtKB/TrEMBL
  A0A8C0Q9V1_CANLF UniProtKB/TrEMBL
  A0A8C0QF73 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PRA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PZU8_CANLF UniProtKB/TrEMBL
  A0A8I3PZX8_CANLF UniProtKB/TrEMBL
  A0A8I3Q0A1_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47587 ENTREZGENE