KCNH4 (potassium voltage-gated channel subfamily H member 4) - Rat Genome Database

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Gene: KCNH4 (potassium voltage-gated channel subfamily H member 4) Chlorocebus sabaeus
Analyze
Symbol: KCNH4
Name: potassium voltage-gated channel subfamily H member 4
RGD ID: 18577515
Description: ENCODES a protein that exhibits potassium channel activity (inferred); voltage-gated potassium channel activity (inferred); INVOLVED IN potassium ion transmembrane transport (inferred); potassium ion transport (inferred); regulation of membrane potential (inferred); FOUND IN membrane (inferred); monoatomic ion channel complex (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,088,084 - 64,112,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1664,088,290 - 64,110,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,902,748 - 34,925,126 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCNH4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,088,084 - 64,112,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1664,088,290 - 64,110,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,902,748 - 34,925,126 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KCNH4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,156,891 - 42,181,142 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,156,891 - 42,181,142 (-)EnsemblGRCh38hg38GRCh38
GRCh371740,308,909 - 40,333,160 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,562,439 - 37,586,822 (-)NCBINCBI36Build 36hg18NCBI36
Build 341737,562,438 - 37,586,822NCBI
Celera1736,964,227 - 36,987,523 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,074,129 - 36,098,412 (-)NCBIHuRef
CHM1_11740,544,659 - 40,569,024 (-)NCBICHM1_1
T2T-CHM13v2.01743,013,376 - 43,037,630 (-)NCBIT2T-CHM13v2.0
Kcnh4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,631,204 - 100,650,941 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,631,202 - 100,650,768 (-)EnsemblGRCm39 Ensembl
GRCm3811100,740,378 - 100,760,115 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,740,376 - 100,759,942 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711100,601,692 - 100,621,092 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,557,693 - 100,575,695 (-)NCBIMGSCv36mm8
Celera11111,356,922 - 111,376,327 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.57NCBI
Kcnh4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,168,644 - 86,188,476 (-)NCBIGRCr8
mRatBN7.21085,668,332 - 85,688,166 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,668,337 - 85,688,158 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1090,704,832 - 90,724,673 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,183,647 - 90,203,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01085,576,570 - 85,596,400 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,645,341 - 88,667,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,647,575 - 88,667,345 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,441,734 - 88,461,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,677,981 - 89,697,799 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11089,692,350 - 89,712,169 (-)NCBI
Celera1084,383,783 - 84,403,601 (-)NCBICelera
Cytogenetic Map10q31NCBI
Kcnh4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,217,021 - 16,233,800 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,217,021 - 16,233,789 (-)NCBIChiLan1.0ChiLan1.0
KCNH4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,802,808 - 22,827,185 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,692,975 - 24,717,299 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01715,134,728 - 15,159,108 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11715,357,446 - 15,380,835 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,357,446 - 15,378,419 (+)Ensemblpanpan1.1panPan2
KCNH4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,734,519 - 20,752,571 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,734,450 - 20,751,274 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha920,195,546 - 20,213,631 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,453,317 - 21,471,395 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,453,504 - 21,471,395 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1920,238,622 - 20,256,699 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,505,729 - 20,523,821 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,608,782 - 20,626,863 (+)NCBIUU_Cfam_GSD_1.0
Kcnh4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560220,070,345 - 20,088,495 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649016,987,832 - 17,004,644 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649016,988,137 - 17,004,461 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Kcnh4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,748,233 - 1,763,209 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,748,211 - 1,763,100 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 18 34 34 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000001136   ⟹   ENSCSAP00000014934
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1664,088,290 - 64,110,096 (+)Ensembl
RefSeq Acc Id: XM_008012655   ⟹   XP_008010846
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11664,088,086 - 64,110,885 (+)NCBI
Vero_WHO_p1.0NW_02366607734,902,748 - 34,925,126 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008012656   ⟹   XP_008010847
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11664,088,084 - 64,110,885 (+)NCBI
Vero_WHO_p1.0NW_02366607734,902,748 - 34,925,126 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008012657   ⟹   XP_008010848
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11664,088,552 - 64,110,885 (+)NCBI
Vero_WHO_p1.0NW_02366607734,903,248 - 34,925,126 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037993186   ⟹   XP_037849114
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607734,902,748 - 34,925,126 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008010846 (Get FASTA)   NCBI Sequence Viewer  
  XP_008010847 (Get FASTA)   NCBI Sequence Viewer  
  XP_008010848 (Get FASTA)   NCBI Sequence Viewer  
  XP_037849114 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014934
  ENSCSAP00000014934.1
RefSeq Acc Id: XP_008010847   ⟸   XM_008012656
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008010846   ⟸   XM_008012655
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S245 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008010848   ⟸   XM_008012657
- Peptide Label: isoform X3
Ensembl Acc Id: ENSCSAP00000014934   ⟸   ENSCSAT00000001136
RefSeq Acc Id: XP_037849114   ⟸   XM_037993186
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003119 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001136.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.260 UniProtKB/TrEMBL
  1.10.287.70 UniProtKB/TrEMBL
  2.60.120.10 UniProtKB/TrEMBL
  PAS domain UniProtKB/TrEMBL
InterPro cNMP-bd-like UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_EAG/ELK/ERG UniProtKB/TrEMBL
  K_chnl_volt-dep_ELK UniProtKB/TrEMBL
  KCNH_channel UniProtKB/TrEMBL
  PAC UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS-assoc_C UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
KEGG Report csab:103243418 UniProtKB/TrEMBL
NCBI Gene KCNH4 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY H MEMBER 4 UniProtKB/TrEMBL
  VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
  PAS_9 UniProtKB/TrEMBL
PRINTS EAGCHANLFMLY UniProtKB/TrEMBL
  ELKCHANNEL UniProtKB/TrEMBL
PROSITE CNMP_BINDING_3 UniProtKB/TrEMBL
  PAC UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
SMART cNMP UniProtKB/TrEMBL
  PAC UniProtKB/TrEMBL
Superfamily-SCOP SSF51206 UniProtKB/TrEMBL
  SSF55785 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A0D9S245 ENTREZGENE, UniProtKB/TrEMBL