TTC22 (tetratricopeptide repeat domain 22) - Rat Genome Database

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Gene: TTC22 (tetratricopeptide repeat domain 22) Chlorocebus sabaeus
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Symbol: TTC22
Name: tetratricopeptide repeat domain 22
RGD ID: 18556841
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 22
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12078,134,698 - 78,157,092 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2078,134,959 - 78,157,897 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603339,124,547 - 39,148,837 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:22301074  



TTC22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12078,134,698 - 78,157,092 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2078,134,959 - 78,157,897 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603339,124,547 - 39,148,837 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TTC22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38154,779,712 - 54,801,323 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl154,779,712 - 54,801,323 (-)EnsemblGRCh38hg38GRCh38
GRCh37155,245,385 - 55,266,996 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36155,022,812 - 55,039,459 (-)NCBINCBI36Build 36hg18NCBI36
Celera153,534,348 - 53,554,537 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef153,360,938 - 53,381,126 (-)NCBIHuRef
CHM1_1155,362,112 - 55,382,299 (-)NCBICHM1_1
T2T-CHM13v2.0154,659,937 - 54,681,544 (-)NCBIT2T-CHM13v2.0
Ttc22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394106,479,646 - 106,497,393 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4106,479,629 - 106,497,386 (+)EnsemblGRCm39 Ensembl
GRCm384106,622,449 - 106,640,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4106,622,432 - 106,640,189 (+)EnsemblGRCm38mm10GRCm38
MGSCv374106,295,054 - 106,312,792 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364106,120,381 - 106,138,121 (+)NCBIMGSCv36mm8
Celera4104,983,496 - 105,003,183 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map449.67NCBI
Ttc22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85126,630,808 - 126,651,954 (+)NCBIGRCr8
mRatBN7.25121,401,973 - 121,423,130 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5121,406,326 - 121,423,130 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5124,019,040 - 124,035,827 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05125,742,088 - 125,758,879 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05125,793,353 - 125,810,140 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05126,217,036 - 126,243,178 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5126,226,291 - 126,244,538 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05130,067,139 - 130,088,221 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45127,700,123 - 127,716,927 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5120,154,561 - 120,171,383 (+)NCBICelera
Cytogenetic Map5q34NCBI
Ttc22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554644,592,667 - 4,610,376 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554644,592,667 - 4,609,148 (+)NCBIChiLan1.0ChiLan1.0
TTC22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21172,028,529 - 172,054,863 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11171,169,465 - 171,195,784 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0154,055,467 - 54,077,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1155,645,199 - 55,665,971 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl155,645,199 - 55,665,971 (-)Ensemblpanpan1.1panPan2
TTC22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1554,360,767 - 54,379,261 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl554,361,063 - 54,377,022 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha554,429,821 - 54,448,511 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0554,548,827 - 54,567,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl554,548,377 - 54,567,472 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1554,545,509 - 54,564,135 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0554,435,645 - 54,454,344 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0554,824,375 - 54,843,053 (+)NCBIUU_Cfam_GSD_1.0
Ttc22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,912,728 - 68,932,523 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365226,483,839 - 6,504,907 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365226,484,055 - 6,504,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6157,556,184 - 157,579,161 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16157,555,204 - 157,579,299 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26145,619,960 - 145,643,045 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ttc22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248625,051,329 - 5,077,778 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248625,051,659 - 5,074,312 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in TTC22
625 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
74 36 20 36 36 58 20


RefSeq Transcripts XM_007978625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000017222   ⟹   ENSCSAP00000016706
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2078,134,959 - 78,157,897 (+)Ensembl
RefSeq Acc Id: XM_007978625   ⟹   XP_007976816
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12078,134,698 - 78,157,092 (+)NCBI
Vero_WHO_p1.0NW_02366603339,124,547 - 39,148,837 (-)NCBI
Sequence:
Protein RefSeqs XP_007976816 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016706.1
RefSeq Acc Id: XP_007976816   ⟸   XM_007978625
Ensembl Acc Id: ENSCSAP00000016706   ⟸   ENSCSAT00000017222



1 to 14 of 14 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000001311 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017222.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
  TTC22 UniProtKB/TrEMBL
KEGG Report csab:103224763 UniProtKB/TrEMBL
NCBI Gene TTC22 ENTREZGENE
PANTHER PTHR16253 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 22 UniProtKB/TrEMBL
Pfam TPR_8 UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0D9S767_CHLSB UniProtKB/TrEMBL
1 to 14 of 14 rows