AXDND1 (axonemal dynein light chain domain containing 1) - Rat Genome Database

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Gene: AXDND1 (axonemal dynein light chain domain containing 1) Chlorocebus sabaeus
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Symbol: AXDND1
Name: axonemal dynein light chain domain containing 1
RGD ID: 18550841
Description: INVOLVED IN manchette assembly (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); chronic kidney disease (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: axonemal dynein light chain domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12549,807,102 - 49,988,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605551,232,552 - 51,475,313 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

References

Genomics

Comparative Map Data
AXDND1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12549,807,102 - 49,988,152 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605551,232,552 - 51,475,313 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
AXDND1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381179,365,705 - 179,554,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1179,365,720 - 179,554,735 (+)EnsemblGRCh38hg38GRCh38
GRCh371179,335,106 - 179,523,870 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361177,601,738 - 177,790,493 (+)NCBINCBI36Build 36hg18NCBI36
Celera1152,443,132 - 152,631,501 (+)NCBICelera
Cytogenetic Map1q25.2NCBI
HuRef1150,562,063 - 150,750,488 (+)NCBIHuRef
CHM1_11180,758,360 - 180,947,690 (+)NCBICHM1_1
T2T-CHM13v2.01178,720,755 - 178,909,737 (+)NCBIT2T-CHM13v2.0
Axdnd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391156,157,985 - 156,248,743 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1156,151,079 - 156,248,729 (-)EnsemblGRCm39 Ensembl
GRCm381156,330,415 - 156,421,176 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1156,323,509 - 156,421,159 (-)EnsemblGRCm38mm10GRCm38
MGSCv371158,295,060 - 158,330,121 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,201,606 - 158,236,667 (-)NCBIMGSCv36mm8
Celera1158,760,478 - 158,794,675 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map167.71NCBI
Axdnd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81371,022,215 - 71,100,010 (-)NCBIGRCr8
mRatBN7.21368,471,957 - 68,544,788 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1368,458,411 - 68,544,172 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01373,950,422 - 74,025,237 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1373,977,578 - 74,005,486 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01378,875,206 - 78,945,563 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41371,319,701 - 71,409,404 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1368,332,114 - 68,406,455 (-)NCBICelera
Cytogenetic Map13q22NCBI
Axdnd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540618,717,820 - 18,858,905 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540618,717,383 - 18,859,263 (+)NCBIChiLan1.0ChiLan1.0
AXDND1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2170,205,603 - 70,395,404 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,863,347 - 70,059,838 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01154,847,978 - 155,043,339 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,536,967 - 158,724,251 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,536,967 - 158,724,251 (+)Ensemblpanpan1.1panPan2
AXDND1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1720,375,973 - 20,480,886 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl720,383,249 - 20,480,823 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha719,900,542 - 20,005,386 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0720,110,165 - 20,217,161 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl720,118,935 - 20,217,099 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1720,019,230 - 20,125,639 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0720,125,601 - 20,232,423 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0720,261,134 - 20,367,509 (-)NCBIUU_Cfam_GSD_1.0
Axdnd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934491,674,429 - 91,763,030 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364819,531,655 - 9,609,564 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AXDND1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9121,120,235 - 121,223,059 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19121,120,031 - 121,209,686 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29132,840,279 - 132,889,532 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Axdnd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247712,824,853 - 2,985,997 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_037985895   ⟹   XP_037841823
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605551,232,552 - 51,475,313 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037841823 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_037841823   ⟸   XM_037985895


Additional Information

Database Acc Id Source(s)
NCBI Gene AXDND1 ENTREZGENE