IFT27 (intraflagellar transport 27) - Rat Genome Database

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Gene: IFT27 (intraflagellar transport 27) Chlorocebus sabaeus
Analyze
Symbol: IFT27
Name: intraflagellar transport 27
RGD ID: 18550375
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); INVOLVED IN cochlea development (ortholog); inner ear receptor cell stereocilium organization (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); asphyxiating thoracic dystrophy (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intraflagellar transport protein 27 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,462,127 - 19,481,045 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,462,233 - 19,480,162 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,385,146 - 106,405,368 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IFT27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,462,127 - 19,481,045 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,462,233 - 19,480,162 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,385,146 - 106,405,368 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
IFT27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,758,211 - 36,776,119 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,758,202 - 36,776,256 (-)EnsemblGRCh38hg38GRCh38
GRCh372237,154,255 - 37,172,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,484,201 - 35,502,060 (-)NCBINCBI36Build 36hg18NCBI36
Build 342235,478,754 - 35,496,614NCBI
Celera2220,952,197 - 20,970,124 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,116,610 - 20,134,536 (-)NCBIHuRef
CHM1_12237,108,544 - 37,126,471 (-)NCBICHM1_1
T2T-CHM13v2.02237,214,144 - 37,232,056 (-)NCBIT2T-CHM13v2.0
Ift27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,043,660 - 78,058,281 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,043,663 - 78,058,307 (-)EnsemblGRCm39 Ensembl
GRCm381578,159,460 - 78,174,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,159,463 - 78,174,107 (-)EnsemblGRCm38mm10GRCm38
MGSCv371577,989,893 - 78,004,538 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361577,986,718 - 78,001,363 (-)NCBIMGSCv36mm8
Celera1579,620,378 - 79,635,028 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1536.92NCBI
Ift27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,619,145 - 111,635,129 (-)NCBIGRCr8
mRatBN7.27109,738,622 - 109,754,416 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,738,622 - 109,754,416 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,488,556 - 111,504,329 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,712,118 - 113,727,891 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,680,286 - 113,696,077 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,393,384 - 119,409,710 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,393,384 - 119,409,710 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,384,971 - 119,401,302 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,080,404 - 116,096,150 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17116,114,639 - 116,148,320 (-)NCBI
Celera7106,078,487 - 106,094,278 (-)NCBICelera
Cytogenetic Map7q34NCBI
Ift27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,295,185 - 23,310,802 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,295,549 - 23,310,824 (-)NCBIChiLan1.0ChiLan1.0
IFT27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,612,311 - 46,630,281 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,303,586 - 49,321,553 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,672,602 - 17,690,568 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,509,349 - 35,527,132 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,509,449 - 35,519,079 (-)Ensemblpanpan1.1panPan2
IFT27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,688,742 - 27,707,343 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,655,905 - 27,707,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,643,164 - 27,661,634 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,481,009 - 28,499,705 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,481,004 - 28,499,691 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,202,485 - 28,220,945 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,511,016 - 28,529,481 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,689,659 - 28,708,124 (+)NCBIUU_Cfam_GSD_1.0
Ift27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,067,537 - 11,080,013 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,077,615 - 4,090,197 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,077,957 - 4,089,898 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,994,215 - 11,017,950 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,994,182 - 11,015,476 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,594,333 - 8,616,173 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ift27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475211,004,841 - 11,021,250 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475211,005,101 - 11,020,493 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IFT27
601 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000005923   ⟹   ENSCSAP00000004137
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1919,462,233 - 19,480,162 (-)Ensembl
RefSeq Acc Id: XM_007975658   ⟹   XP_007973849
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11919,462,127 - 19,480,823 (-)NCBI
Vero_WHO_p1.0NW_023666045106,385,146 - 106,405,368 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007975659   ⟹   XP_007973850
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11919,462,127 - 19,478,712 (-)NCBI
Vero_WHO_p1.0NW_023666045106,387,098 - 106,405,368 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007975660   ⟹   XP_007973851
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11919,465,573 - 19,481,045 (-)NCBI
Vero_WHO_p1.0NW_023666045106,385,146 - 106,401,934 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007975661   ⟹   XP_007973852
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11919,464,778 - 19,481,045 (-)NCBI
Vero_WHO_p1.0NW_023666045106,385,146 - 106,405,117 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007973849 (Get FASTA)   NCBI Sequence Viewer  
  XP_007973850 (Get FASTA)   NCBI Sequence Viewer  
  XP_007973851 (Get FASTA)   NCBI Sequence Viewer  
  XP_007973852 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004137
  ENSCSAP00000004137.1
RefSeq Acc Id: XP_007973849   ⟸   XM_007975658
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R698 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007973850   ⟸   XM_007975659
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007973852   ⟸   XM_007975661
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007973851   ⟸   XM_007975660
- Peptide Label: isoform X3
Ensembl Acc Id: ENSCSAP00000004137   ⟸   ENSCSAT00000005923


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007875 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005923.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab_GTPases_membrane_traffic UniProtKB/TrEMBL
  RabL4_euk UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report csab:103223254 UniProtKB/TrEMBL
NCBI Gene IFT27 ENTREZGENE
PANTHER DRAB11-RELATED UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9R698 ENTREZGENE, UniProtKB/TrEMBL