TMEM170A (transmembrane protein 170A) - Rat Genome Database

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Gene: TMEM170A (transmembrane protein 170A) Chlorocebus sabaeus
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Symbol: TMEM170A
Name: transmembrane protein 170A
RGD ID: 18548096
Description: INVOLVED IN endoplasmic reticulum tubular network organization (inferred); nuclear envelope organization (inferred); nuclear pore complex assembly (inferred); ASSOCIATED WITH basal cell carcinoma (ortholog); Joubert syndrome 20 (ortholog); macular corneal dystrophy (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,932,401 - 60,948,951 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,928,179 - 60,949,019 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604715,110,909 - 15,127,642 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMEM170A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,932,401 - 60,948,951 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,928,179 - 60,949,019 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604715,110,909 - 15,127,642 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TMEM170A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381675,443,054 - 75,464,737 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1675,443,054 - 75,465,497 (-)EnsemblGRCh38hg38GRCh38
GRCh371675,476,952 - 75,498,635 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361674,038,418 - 74,056,085 (-)NCBINCBI36Build 36hg18NCBI36
Celera1659,775,225 - 59,792,897 (-)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1661,232,391 - 61,249,969 (-)NCBIHuRef
CHM1_11676,893,252 - 76,910,917 (-)NCBICHM1_1
T2T-CHM13v2.01681,488,941 - 81,510,632 (-)NCBIT2T-CHM13v2.0
Tmem170
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398112,589,670 - 112,603,378 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8112,589,670 - 112,603,382 (-)EnsemblGRCm39 Ensembl
GRCm388111,863,038 - 111,876,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,863,038 - 111,876,750 (-)EnsemblGRCm38mm10GRCm38
MGSCv378114,388,798 - 114,400,575 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368114,751,571 - 114,763,348 (-)NCBIMGSCv36mm8
Celera8116,093,449 - 116,105,227 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map858.08NCBI
Tmem170a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,743,221 - 56,756,085 (-)NCBIGRCr8
mRatBN7.21939,833,947 - 39,846,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,833,980 - 39,846,783 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1946,694,062 - 46,705,013 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01947,347,393 - 47,358,344 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01949,592,373 - 49,603,691 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01944,090,418 - 44,101,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1944,088,612 - 44,101,365 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,897,334 - 54,901,842 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,804,662 - 41,809,223 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1939,195,099 - 39,206,045 (-)NCBICelera
Cytogenetic Map19q12NCBI
Tmem170a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554842,057,934 - 2,078,157 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554842,057,934 - 2,078,157 (+)NCBIChiLan1.0ChiLan1.0
TMEM170A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21885,161,560 - 85,211,043 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11691,083,918 - 91,133,716 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01656,012,951 - 56,062,442 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11675,361,367 - 75,382,857 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1675,361,367 - 75,382,857 (-)Ensemblpanpan1.1panPan2
TMEM170A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1575,287,997 - 75,307,064 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl575,288,139 - 75,303,755 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,265,104 - 75,284,192 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0575,601,763 - 75,620,852 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl575,601,926 - 75,620,840 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1575,537,598 - 75,556,680 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0575,372,773 - 75,391,857 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0575,863,907 - 75,883,002 (+)NCBIUU_Cfam_GSD_1.0
Tmem170a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934935,404,564 - 35,419,021 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647524,169,224 - 24,184,505 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647524,168,798 - 24,184,519 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM170A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl612,195,137 - 12,215,744 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1612,195,123 - 12,215,753 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,036,386 - 12,055,073 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tmem170a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474611,458,662 - 11,476,640 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474611,458,868 - 11,479,425 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM170A
400 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000001711   ⟹   ENSCSAP00000000053
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl560,928,179 - 60,949,019 (-)Ensembl
RefSeq Acc Id: XM_007994092   ⟹   XP_007992283
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1560,932,401 - 60,948,951 (-)NCBI
Vero_WHO_p1.0NW_02366604715,110,945 - 15,127,642 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007994093   ⟹   XP_007992284
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1560,932,401 - 60,948,944 (-)NCBI
Vero_WHO_p1.0NW_02366604715,110,936 - 15,127,642 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038008254   ⟹   XP_037864182
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604715,110,909 - 15,127,642 (+)NCBI
RefSeq Acc Id: XM_038008255   ⟹   XP_037864183
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604715,111,448 - 15,127,642 (+)NCBI
RefSeq Acc Id: XM_038008256   ⟹   XP_037864184
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604715,111,221 - 15,127,642 (+)NCBI
RefSeq Acc Id: XM_038008257   ⟹   XP_037864185
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604715,111,444 - 15,127,642 (+)NCBI
RefSeq Acc Id: XM_038008258   ⟹   XP_037864186
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604715,111,217 - 15,127,642 (+)NCBI
RefSeq Acc Id: XP_007992283   ⟸   XM_007994092
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QUL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007992284   ⟸   XM_007994093
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000000053   ⟸   ENSCSAT00000001711
RefSeq Acc Id: XP_037864182   ⟸   XM_038008254
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037864186   ⟸   XM_038008258
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037864184   ⟸   XM_038008256
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037864185   ⟸   XM_038008257
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037864183   ⟸   XM_038008255
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003682 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001711.1 UniProtKB/TrEMBL
InterPro Transmembrane_pr_170 UniProtKB/TrEMBL
KEGG Report csab:103233312 UniProtKB/TrEMBL
NCBI Gene TMEM170A ENTREZGENE
PANTHER PTHR22779 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 170A UniProtKB/TrEMBL
Pfam Tmemb_170 UniProtKB/TrEMBL
UniProt A0A0D9QUL4 ENTREZGENE, UniProtKB/TrEMBL