LOC103245886 (heterogeneous nuclear ribonucleoprotein A1-like) - Rat Genome Database

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Gene: LOC103245886 (heterogeneous nuclear ribonucleoprotein A1-like) Chlorocebus sabaeus
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Symbol: LOC103245886
Name: heterogeneous nuclear ribonucleoprotein A1-like
RGD ID: 18543760
Description: ENCODES a protein that exhibits G-rich strand telomeric DNA binding (inferred); miRNA binding (inferred); mRNA 3'-UTR binding (inferred); INVOLVED IN cellular response to glucose starvation (inferred); cellular response to sodium arsenite (inferred); import into nucleus (inferred); FOUND IN catalytic step 2 spliceosome (inferred); cytoplasm (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein A1 pseudogene
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12647,513,308 - 47,515,651 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603799,526,983 - 99,528,892 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Variants

.
Variants in LOC103245886
55 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_037993815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_037993815   ⟹   XP_037849743
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603799,526,983 - 99,528,892 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037849743 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001740.1
RefSeq Acc Id: XP_037849743   ⟸   XM_037993815
- UniProtKB: A0A0D9QZF1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005436 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003463.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro hnRNPA1/3_RRM2 UniProtKB/TrEMBL
  HnRNPA1/A2_C UniProtKB/TrEMBL
  hnRNPA1_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report csab:103238430 UniProtKB/TrEMBL
NCBI Gene LOC103245886 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1-RELATED UniProtKB/TrEMBL
  HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN UniProtKB/TrEMBL
Pfam HnRNPA1 UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP RNA-binding domain, RBD UniProtKB/TrEMBL
UniProt A0A0D9QZF1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103245886  heterogeneous nuclear ribonucleoprotein A1-like  LOC103245886  heterogeneous nuclear ribonucleoprotein A1 pseudogene  Symbol and/or name change 5135510 APPROVED