LOC103241655 (olfactory receptor 56A4) - Rat Genome Database

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Gene: LOC103241655 (olfactory receptor 56A4) Chlorocebus sabaeus
Analyze
Symbol: LOC103241655 (Ensembl: OR56A4)
Name: olfactory receptor 56A4 (Ensembl:olfactory receptor family 56 subfamily A member 4)
RGD ID: 18542588
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,772,635 - 58,778,929 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,772,946 - 58,773,887 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038156,631,260 - 156,632,453 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC103241655
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,772,635 - 58,778,929 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,772,946 - 58,773,887 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038156,631,260 - 156,632,453 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
OR56A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,999,445 - 6,006,946 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,999,445 - 6,006,946 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,020,675 - 6,028,176 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,979,857 - 5,980,954 (-)NCBINCBI36Build 36hg18NCBI36
Build 34115,979,856 - 5,980,954NCBI
Celera116,142,864 - 6,143,961 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef115,683,345 - 5,684,442 (-)NCBIHuRef
CHM1_1116,022,494 - 6,023,591 (-)NCBICHM1_1
T2T-CHM13v2.0116,057,948 - 6,065,449 (-)NCBIT2T-CHM13v2.0
Or56a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397104,805,949 - 104,806,887 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7104,803,899 - 104,812,860 (-)EnsemblGRCm39 Ensembl
GRCm387105,156,742 - 105,157,680 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,154,692 - 105,163,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv377112,305,256 - 112,306,194 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367105,030,563 - 105,031,501 (-)NCBIMGSCv36mm8
Celera7105,431,807 - 105,432,745 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.77NCBI
Olr193
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81168,926,471 - 168,927,412 (-)NCBIGRCr8
mRatBN7.21159,514,613 - 159,515,554 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1159,514,558 - 159,520,975 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,532,404 - 167,533,344 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,718,384 - 174,719,324 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,606,009 - 167,606,949 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,004,634 - 170,005,597 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,990,693 - 170,005,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01177,019,244 - 177,020,185 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41162,895,759 - 162,896,700 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11162,991,235 - 162,992,177 (-)NCBI
Celera1157,454,292 - 157,455,233 (-)NCBICelera
Cytogenetic Map1q32NCBI
LOC100989488
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v298,437,054 - 8,444,549 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,400,952 - 8,408,447 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,135,566 - 6,136,762 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1115,816,805 - 5,818,001 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl115,816,864 - 5,817,961 (-)Ensemblpanpan1.1panPan2
OR56A4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,315,080 - 29,316,523 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,315,471 - 29,316,412 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,006,434 - 29,018,235 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02130,130,308 - 30,141,858 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12129,453,126 - 29,464,663 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02129,619,175 - 29,630,779 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02129,809,961 - 29,823,836 (-)NCBIUU_Cfam_GSD_1.0
LOC110262266
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.193,885,910 - 3,887,115 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1

Variants

.
Variants in LOC103241655
133 total Variants

Expression

RNA-SEQ Expression

ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
1 17 17 17 1

Sequence


Ensembl Acc Id: ENSCSAT00000019430   ⟹   ENSCSAP00000018849
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl158,772,946 - 58,773,887 (+)Ensembl
RefSeq Acc Id: XM_037997643   ⟹   XP_037853571
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038156,631,260 - 156,632,453 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037853571 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018849.1
Ensembl Acc Id: ENSCSAP00000018849   ⟸   ENSCSAT00000019430
RefSeq Acc Id: XP_037853571   ⟸   XM_037997643
- UniProtKB: A0A0D9SDB0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019340 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019430.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_rcpt UniProtKB/TrEMBL
NCBI Gene LOC103241655 ENTREZGENE
PANTHER OLFACTORY RECEPTOR 56A4 UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 56B1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9SDB0 ENTREZGENE, UniProtKB/TrEMBL