LOC103230363 (phosphoglycerate mutase 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC103230363 (phosphoglycerate mutase 1) Chlorocebus sabaeus
Analyze
Symbol: LOC103230363 (Ensembl: PGAM4)
Name: phosphoglycerate mutase 1
RGD ID: 18540272
Description: ENCODES a protein that exhibits 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity (inferred); bisphosphoglycerate mutase activity (inferred); intramolecular phosphotransferase activity (inferred); INVOLVED IN glycolytic process (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103240394; phosphoglycerate mutase 1 pseudogene
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12530,608,930 - 30,610,406 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2530,609,601 - 30,610,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605531,492,416 - 31,494,125 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 20 60
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007989035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000018286   ⟹   ENSCSAP00000017747
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2530,609,601 - 30,610,365 (-)Ensembl
RefSeq Acc Id: XM_007989035   ⟹   XP_007987226
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12530,608,930 - 30,610,406 (-)NCBI
Vero_WHO_p1.0NW_02366605531,492,416 - 31,494,125 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007987226 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017747.1
  ENSCSAP00000018380.1
Reference Protein Sequences
RefSeq Acc Id: XP_007987226   ⟸   XM_007989035
- UniProtKB: A0A0D9SBZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000017747   ⟸   ENSCSAT00000018286


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000249 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCSAG00000018861 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018286.1 UniProtKB/TrEMBL
  ENSCSAT00000018951.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1240 UniProtKB/TrEMBL
InterPro His_Pase_superF_clade-1 UniProtKB/TrEMBL
  His_PPase_superfam UniProtKB/TrEMBL
  PG/BPGM_mutase_AS UniProtKB/TrEMBL
  Phosphogly_mut1 UniProtKB/TrEMBL
KEGG Report csab:103230363 UniProtKB/TrEMBL
NCBI Gene LOC103230363 ENTREZGENE
PANTHER PHOSPHOGLYCERATE MUTASE 1 UniProtKB/TrEMBL
  PTHR11931 UniProtKB/TrEMBL
Pfam His_Phos_1 UniProtKB/TrEMBL
PIRSF 6PFK_2-Ptase UniProtKB/TrEMBL
PROSITE PG_MUTASE UniProtKB/TrEMBL
SMART PGAM UniProtKB/TrEMBL
Superfamily-SCOP SSF53254 UniProtKB/TrEMBL
UniProt A0A0D9SA58_CHLSB UniProtKB/TrEMBL
  A0A0D9SBZ1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 LOC103230363  phosphoglycerate mutase 1  LOC103240394  phosphoglycerate mutase 1 pseudogene  Data merged from RGD:18346813 737654 PROVISIONAL