CIBAR2 (CBY1 interacting BAR domain containing 2) - Rat Genome Database

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Gene: CIBAR2 (CBY1 interacting BAR domain containing 2) Chlorocebus sabaeus
Analyze
Symbol: CIBAR2
Name: CBY1 interacting BAR domain containing 2
RGD ID: 18535618
Description: INVOLVED IN cell projection organization (inferred); cilium assembly (inferred); ASSOCIATED WITH Crohn's disease (ortholog); persistent fetal circulation syndrome (ortholog); schizophrenia (ortholog); FOUND IN centriole (inferred); ciliary basal body (inferred); ciliary transition zone (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CBY1-interacting BAR domain-containing protein 2; FAM92B; family with sequence similarity 92 member B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1570,511,431 - 70,525,861 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl570,511,534 - 70,525,197 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660475,217,230 - 5,233,725 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CIBAR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1570,511,431 - 70,525,861 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl570,511,534 - 70,525,197 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660475,217,230 - 5,233,725 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CIBAR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381685,098,358 - 85,112,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1685,098,358 - 85,112,472 (-)EnsemblGRCh38hg38GRCh38
GRCh371685,131,964 - 85,146,078 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361683,689,466 - 83,703,615 (-)NCBINCBI36Build 36hg18NCBI36
Celera1669,434,172 - 69,448,321 (-)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1670,884,227 - 70,898,379 (-)NCBIHuRef
CHM1_11686,543,493 - 86,557,642 (-)NCBICHM1_1
T2T-CHM13v2.01691,164,997 - 91,179,113 (-)NCBIT2T-CHM13v2.0
Cibar2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,893,136 - 120,904,225 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,893,136 - 120,904,205 (-)EnsemblGRCm39 Ensembl
GRCm388120,166,397 - 120,177,486 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8120,166,397 - 120,177,466 (-)EnsemblGRCm38mm10GRCm38
MGSCv378122,690,297 - 122,701,369 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368123,052,375 - 123,063,446 (-)NCBIMGSCv36mm8
Celera8124,386,967 - 124,397,816 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map869.09NCBI
Cibar2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81965,126,231 - 65,138,015 (-)NCBIGRCr8
mRatBN7.21948,217,617 - 48,229,418 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1948,215,486 - 48,229,404 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01953,740,763 - 53,754,738 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,743,383 - 53,754,602 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,469,023 - 64,483,509 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,484,967 - 50,515,704 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1947,471,228 - 47,484,566 (-)NCBICelera
Cytogenetic Map19q12NCBI
Cibar2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955541478,603 - 486,046 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955541478,437 - 486,171 (-)NCBIChiLan1.0ChiLan1.0
CIBAR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21894,850,546 - 94,864,765 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116100,767,715 - 100,781,936 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01665,768,014 - 65,782,236 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11685,106,709 - 85,120,815 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1685,106,709 - 85,120,815 (-)Ensemblpanpan1.1panPan2
CIBAR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1567,465,646 - 67,477,709 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl567,465,800 - 67,476,672 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha567,479,175 - 67,490,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0567,697,049 - 67,708,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl567,696,363 - 67,708,203 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1567,713,044 - 67,724,398 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0567,547,376 - 67,558,687 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0567,962,282 - 67,973,658 (+)NCBIUU_Cfam_GSD_1.0
Cibar2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,344,243 - 27,355,629 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366413,099,616 - 3,109,969 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIBAR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl63,710,213 - 3,720,198 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.163,709,429 - 3,720,199 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.264,283,063 - 4,293,072 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cibar2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247461,798,912 - 1,807,608 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247461,799,521 - 1,808,415 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CIBAR2
467 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
65 25 17 22 22 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000001193   ⟹   ENSCSAP00000014887
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl570,511,534 - 70,525,197 (-)Ensembl
RefSeq Acc Id: XM_038008199   ⟹   XP_037864127
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660475,217,230 - 5,233,478 (+)NCBI
RefSeq Acc Id: XM_038008200   ⟹   XP_037864128
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660475,217,230 - 5,233,725 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037864127 (Get FASTA)   NCBI Sequence Viewer  
  XP_037864128 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014887.1
Ensembl Acc Id: ENSCSAP00000014887   ⟸   ENSCSAT00000001193
RefSeq Acc Id: XP_037864128   ⟸   XM_038008200
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S1Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037864127   ⟸   XM_038008199
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S1Z8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003158 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001193.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  BAR_FAM92 UniProtKB/TrEMBL
  FAM92 UniProtKB/TrEMBL
NCBI Gene CIBAR2 ENTREZGENE
PANTHER CBY1-INTERACTING BAR DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PTHR21223 UniProtKB/TrEMBL
Pfam FAM92 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
UniProt A0A0D9S1Z8 ENTREZGENE, UniProtKB/TrEMBL