SPATA16 (spermatogenesis associated 16) - Rat Genome Database

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Gene: SPATA16 (spermatogenesis associated 16) Chlorocebus sabaeus
Analyze
Symbol: SPATA16
Name: spermatogenesis associated 16
RGD ID: 18532252
Description: INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH Fanconi-Bickel syndrome (ortholog); male infertility (ortholog); male infertility due to globozoospermia (ortholog); FOUND IN Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis-associated protein 16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11516,283,640 - 16,540,132 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1516,307,852 - 16,539,918 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606325,038,451 - 25,301,165 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SPATA16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11516,283,640 - 16,540,132 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1516,307,852 - 16,539,918 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606325,038,451 - 25,301,165 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SPATA16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383172,889,357 - 173,141,235 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3172,889,357 - 173,141,235 (-)EnsemblGRCh38hg38GRCh38
GRCh373172,607,147 - 172,859,025 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363174,089,841 - 174,341,695 (-)NCBINCBI36Build 36hg18NCBI36
Build 343174,089,851 - 174,341,703NCBI
Celera3171,006,118 - 171,258,045 (-)NCBICelera
Cytogenetic Map3q26.31NCBI
HuRef3169,978,096 - 170,229,599 (-)NCBIHuRef
CHM1_13172,570,042 - 172,821,943 (-)NCBICHM1_1
T2T-CHM13v2.03175,675,113 - 175,927,030 (-)NCBIT2T-CHM13v2.0
Spata16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39326,691,769 - 27,037,398 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl326,691,769 - 27,037,361 (+)EnsemblGRCm39 Ensembl
GRCm38326,637,620 - 26,983,249 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl326,637,620 - 26,983,212 (+)EnsemblGRCm38mm10GRCm38
MGSCv37326,536,553 - 26,882,134 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36326,828,704 - 27,174,287 (+)NCBIMGSCv36mm8
Celera326,610,852 - 26,954,772 (+)NCBICelera
Cytogenetic Map3A3NCBI
cM Map310.74NCBI
Spata16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82111,413,958 - 111,794,348 (+)NCBIGRCr8
mRatBN7.22109,485,287 - 109,865,665 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2109,485,274 - 109,865,659 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02112,281,326 - 112,659,911 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2112,281,376 - 112,659,927 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02132,316,091 - 132,380,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02132,001,122 - 132,294,134 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42112,490,919 - 112,853,681 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2104,707,131 - 105,078,173 (+)NCBICelera
Cytogenetic Map2q24NCBI
Spata16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554202,910,749 - 3,134,202 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554202,910,780 - 3,134,177 (-)NCBIChiLan1.0ChiLan1.0
SPATA16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22170,774,017 - 170,986,973 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13170,778,735 - 170,991,691 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03169,898,861 - 170,156,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13178,079,118 - 178,335,617 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3178,079,118 - 178,335,617 (-)Ensemblpanpan1.1panPan2
SPATA16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13436,995,326 - 37,231,346 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3436,972,308 - 37,231,682 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3446,006,914 - 46,242,818 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03437,080,462 - 37,317,220 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3437,079,521 - 37,317,474 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13437,017,887 - 37,254,214 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03436,987,343 - 37,223,489 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03437,244,458 - 37,480,669 (-)NCBIUU_Cfam_GSD_1.0
Spata16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602103,757,903 - 103,996,099 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936703125,603 - 339,700 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936703125,603 - 339,700 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13111,397,190 - 111,643,986 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113111,397,368 - 111,609,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Spata16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473050,913,852 - 51,154,691 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473050,913,919 - 51,154,612 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
4 17 17 17 4

Sequence


Ensembl Acc Id: ENSCSAT00000010942   ⟹   ENSCSAP00000009025
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1516,307,852 - 16,539,918 (+)Ensembl
RefSeq Acc Id: XM_037988555   ⟹   XP_037844483
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606325,038,451 - 25,301,165 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037844483 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009025.1
Ensembl Acc Id: ENSCSAP00000009025   ⟸   ENSCSAT00000010942
RefSeq Acc Id: XP_037844483   ⟸   XM_037988555
- UniProtKB: A0A0D9RK86 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012878 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010942.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro SPATA16 UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
NCBI Gene SPATA16 ENTREZGENE
PANTHER PTHR47228 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 16 UniProtKB/TrEMBL
Pfam NYD-SP12_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0D9RK86 ENTREZGENE, UniProtKB/TrEMBL