ZSCAN22 (zinc finger and SCAN domain containing 22) - Rat Genome Database

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Gene: ZSCAN22 (zinc finger and SCAN domain containing 22) Chlorocebus sabaeus
Analyze
Symbol: ZSCAN22
Name: zinc finger and SCAN domain containing 22
RGD ID: 18503363
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); zinc ion binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH Liver Neoplasms (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and SCAN domain-containing protein 22
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,608,188 - 50,616,961 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl650,608,214 - 50,619,176 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660453,901,728 - 3,915,463 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZSCAN22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,608,188 - 50,616,961 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl650,608,214 - 50,619,176 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660453,901,728 - 3,915,463 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZSCAN22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381958,326,994 - 58,342,332 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1958,326,994 - 58,342,343 (+)EnsemblGRCh38hg38GRCh38
GRCh371958,838,360 - 58,853,698 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,530,197 - 63,545,510 (+)NCBINCBI36Build 36hg18NCBI36
Build 341963,530,196 - 63,545,507NCBI
Celera1955,882,370 - 55,897,698 (+)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1955,147,529 - 55,162,854 (+)NCBIHuRef
CHM1_11958,832,615 - 58,847,629 (+)NCBICHM1_1
T2T-CHM13v2.01961,423,408 - 61,438,747 (+)NCBIT2T-CHM13v2.0
Zscan22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,631,736 - 12,643,010 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,631,742 - 12,643,010 (+)EnsemblGRCm39 Ensembl
GRCm38712,897,798 - 12,909,083 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,897,815 - 12,909,083 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,483,164 - 13,493,588 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,797,994 - 11,808,418 (+)NCBIMGSCv36mm8
Celera710,523,096 - 10,533,528 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.68NCBI
Zscan22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,588,520 - 82,599,952 (+)NCBIGRCr8
mRatBN7.2173,516,328 - 73,527,766 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,516,395 - 73,527,697 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0165,675,932 - 65,702,955 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,677,621 - 65,681,440 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0166,503,660 - 66,516,521 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,788,832 - 72,801,150 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera160,311,038 - 60,322,448 (-)NCBICelera
Cytogenetic Map1q21NCBI
ZSCAN22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,604,406 - 64,619,260 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,392,321 - 66,411,487 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01955,336,662 - 55,351,504 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11964,162,408 - 64,177,057 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,162,413 - 64,177,057 (+)Ensemblpanpan1.1panPan2
ZSCAN22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,608,190 - 99,621,256 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,611,104 - 99,620,356 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1100,003,711 - 100,016,296 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01100,249,388 - 100,261,975 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1100,249,833 - 100,261,674 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,894,862 - 99,907,450 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,573,812 - 99,619,808 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01100,362,363 - 100,374,950 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in ZSCAN22
273 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000016930   ⟹   ENSCSAP00000016425
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl650,608,214 - 50,619,176 (+)Ensembl
RefSeq Acc Id: XM_007998423   ⟹   XP_007996614
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,608,188 - 50,616,961 (+)NCBI
Vero_WHO_p1.0NW_0236660453,901,728 - 3,915,463 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007998424   ⟹   XP_007996615
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,608,205 - 50,616,961 (+)NCBI
Vero_WHO_p1.0NW_0236660453,901,737 - 3,915,463 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038006458   ⟹   XP_037862386
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660453,902,808 - 3,915,463 (+)NCBI
RefSeq Acc Id: XR_005243191
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660453,901,728 - 3,915,463 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007996614 (Get FASTA)   NCBI Sequence Viewer  
  XP_007996615 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862386 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016425.1
RefSeq Acc Id: XP_007996614   ⟸   XM_007998423
RefSeq Acc Id: XP_007996615   ⟸   XM_007998424
Ensembl Acc Id: ENSCSAP00000016425   ⟸   ENSCSAT00000016930
RefSeq Acc Id: XP_037862386   ⟸   XM_038006458


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001601 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016930.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report csab:103235447 UniProtKB/TrEMBL
NCBI Gene ZSCAN22 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 771 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9S6D6_CHLSB UniProtKB/TrEMBL