RAI14 (retinoic acid induced 14) - Rat Genome Database

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Gene: RAI14 (retinoic acid induced 14) Chlorocebus sabaeus
Analyze
Symbol: RAI14
Name: retinoic acid induced 14
RGD ID: 18489929
Description: ENCODES a protein that exhibits actin binding (inferred); ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoskeleton (inferred); cytosol (inferred); fibrillar center (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankycorbin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,551,774 - 33,726,302 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,551,824 - 33,726,554 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607123,848,853 - 24,025,239 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RAI14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,551,774 - 33,726,302 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,551,824 - 33,726,554 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607123,848,853 - 24,025,239 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RAI14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38534,656,328 - 34,832,612 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl534,656,328 - 34,832,612 (+)EnsemblGRCh38hg38GRCh38
GRCh37534,656,433 - 34,832,717 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36534,692,275 - 34,868,474 (+)NCBINCBI36Build 36hg18NCBI36
Build 34534,692,274 - 34,868,473NCBI
Celera534,538,244 - 34,714,519 (+)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef534,604,600 - 34,781,229 (+)NCBIHuRef
CHM1_1534,658,628 - 34,834,904 (+)NCBICHM1_1
T2T-CHM13v2.0534,903,424 - 35,079,712 (+)NCBIT2T-CHM13v2.0
Rai14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,569,057 - 10,719,353 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1510,569,055 - 10,714,710 (-)EnsemblGRCm39 Ensembl
GRCm381510,568,971 - 10,719,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,568,969 - 10,714,624 (-)EnsemblGRCm38mm10GRCm38
MGSCv371510,498,733 - 10,644,386 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361510,513,703 - 10,658,265 (-)NCBIMGSCv36mm8
Celera1510,370,673 - 10,514,828 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.35NCBI
Rai14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,273,439 - 61,411,141 (-)NCBIGRCr8
mRatBN7.2259,546,284 - 59,682,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,546,284 - 59,681,971 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx266,654,015 - 66,790,648 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0264,775,535 - 64,912,153 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0259,776,912 - 59,913,535 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0260,546,083 - 60,684,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,546,091 - 60,683,451 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0283,992,752 - 84,128,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4259,923,115 - 60,060,724 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1259,851,348 - 59,988,957 (-)NCBI
Celera258,991,850 - 59,127,836 (+)NCBICelera
Cytogenetic Map2q16NCBI
Rai14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542619,861,053 - 19,981,904 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542619,831,811 - 19,980,717 (+)NCBIChiLan1.0ChiLan1.0
RAI14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2475,503,918 - 75,680,819 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1573,657,550 - 73,834,420 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0575,537,636 - 75,714,573 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1580,817,483 - 80,984,412 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl580,817,483 - 80,963,798 (-)Ensemblpanpan1.1panPan2
RAI14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,460,728 - 73,599,070 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,461,523 - 73,585,173 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha473,077,990 - 73,215,267 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0473,967,392 - 74,105,005 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,966,399 - 74,104,912 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,714,558 - 73,851,859 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,838,090 - 73,975,300 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,371,997 - 74,509,858 (-)NCBIUU_Cfam_GSD_1.0
Rai14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,544,487 - 224,655,287 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365186,716,530 - 6,827,387 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365186,716,546 - 6,827,349 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAI14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,268,793 - 20,435,845 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,268,728 - 20,435,846 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,275,074 - 21,337,339 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rai14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475920,062,018 - 20,216,868 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 18 34 34 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000015230   ⟹   ENSCSAP00000013175
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl433,551,824 - 33,726,554 (+)Ensembl
RefSeq Acc Id: XM_007961324   ⟹   XP_007959515
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1433,551,774 - 33,726,302 (+)NCBI
Vero_WHO_p1.0NW_02366607123,848,853 - 24,025,239 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007961325   ⟹   XP_007959516
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1433,551,776 - 33,726,302 (+)NCBI
Vero_WHO_p1.0NW_02366607123,848,853 - 24,024,977 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037990740   ⟹   XP_037846668
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607123,848,896 - 24,025,239 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007959515 (Get FASTA)   NCBI Sequence Viewer  
  XP_007959516 (Get FASTA)   NCBI Sequence Viewer  
  XP_037846668 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013175
  ENSCSAP00000013175.1
RefSeq Acc Id: XP_007959515   ⟸   XM_007961324
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RX36 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007959516   ⟸   XM_007961325
- Peptide Label: isoform X3
Ensembl Acc Id: ENSCSAP00000013175   ⟸   ENSCSAT00000015230
RefSeq Acc Id: XP_037846668   ⟸   XM_037990740
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017137 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015230.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
KEGG Report csab:103215112 UniProtKB/TrEMBL
NCBI Gene RAI14 ENTREZGENE
PANTHER ANKYCORBIN UniProtKB/TrEMBL
  PTHR24129 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A0D9RX36 ENTREZGENE, UniProtKB/TrEMBL