ICE1 (interactor of little elongation complex ELL subunit 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ICE1 (interactor of little elongation complex ELL subunit 1) Chlorocebus sabaeus
Analyze
Symbol: ICE1
Name: interactor of little elongation complex ELL subunit 1
RGD ID: 18484667
Description: ENCODES a protein that exhibits protein-macromolecule adaptor activity (inferred); INVOLVED IN positive regulation of intracellular protein transport (inferred); positive regulation of protein-containing complex assembly (inferred); positive regulation of transcription by RNA polymerase III (inferred); FOUND IN Cajal body (inferred); euchromatin (inferred); histone locus body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: little elongation complex subunit 1; uncharacterized protein KIAA0947 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.145,150,090 - 5,216,864 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl45,167,199 - 5,216,933 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606423,579,944 - 23,646,179 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
ICE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.145,150,090 - 5,216,864 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl45,167,199 - 5,216,933 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606423,579,944 - 23,646,179 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ICE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3855,422,677 - 5,490,220 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl55,420,664 - 5,490,220 (+)EnsemblGRCh38hg38GRCh38
GRCh3755,422,790 - 5,490,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3655,475,807 - 5,543,338 (+)NCBINCBI36Build 36hg18NCBI36
Celera55,448,998 - 5,516,538 (+)NCBICelera
Cytogenetic Map5p15.32NCBI
HuRef55,396,259 - 5,463,831 (+)NCBIHuRef
CHM1_155,422,775 - 5,490,347 (+)NCBICHM1_1
T2T-CHM13v2.055,350,239 - 5,417,793 (+)NCBIT2T-CHM13v2.0
Ice1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391370,736,808 - 70,785,958 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1370,699,826 - 70,785,753 (-)EnsemblGRCm39 Ensembl
GRCm381370,588,688 - 70,637,839 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1370,551,707 - 70,637,634 (-)EnsemblGRCm38mm10GRCm38
MGSCv371370,727,567 - 70,776,512 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361371,019,314 - 71,073,934 (-)NCBIMGSCv36mm8
Celera1372,931,505 - 72,980,649 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1335.97NCBI
Ice1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8134,468,839 - 34,508,346 (+)NCBIGRCr8
mRatBN7.2132,640,372 - 32,682,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl132,640,407 - 32,679,898 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0135,280,481 - 35,322,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl135,280,701 - 35,319,182 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0136,680,159 - 36,722,468 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4172,771,969 - 2,811,255 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1172,755,059 - 2,810,243 (+)NCBI
Celera131,257,531 - 31,299,819 (+)NCBICelera
Cytogenetic Map1p11NCBI
Ice1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555043,427,612 - 3,465,313 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555043,409,431 - 3,465,245 (+)NCBIChiLan1.0ChiLan1.0
ICE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v245,683,652 - 5,751,353 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan153,837,257 - 3,904,960 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v055,756,574 - 5,824,227 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.155,435,482 - 5,503,437 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl55,435,482 - 5,503,437 (+)Ensemblpanpan1.1panPan2
ICE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1348,052,211 - 8,110,779 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl348,052,993 - 8,110,785 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3412,560,242 - 12,622,744 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0347,953,943 - 8,016,394 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl347,957,662 - 8,016,393 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1348,001,593 - 8,063,876 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0347,981,278 - 8,043,623 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0348,194,300 - 8,256,672 (-)NCBIUU_Cfam_GSD_1.0
Ice1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213241,099,820 - 241,154,642 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366341,690,814 - 1,745,901 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366341,691,039 - 1,745,842 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ICE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1676,195,361 - 76,254,318 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11676,195,357 - 76,254,365 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21682,397,966 - 82,413,944 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ice1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247513,334,380 - 3,383,573 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247513,321,999 - 3,383,462 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000015437   ⟹   ENSCSAP00000013378
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl45,167,199 - 5,216,933 (+)Ensembl
RefSeq Acc Id: XM_007961161   ⟹   XP_007959352
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.145,150,090 - 5,216,864 (+)NCBI
Vero_WHO_p1.0NW_02366606423,579,944 - 23,646,179 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007959352 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013378.1
RefSeq Acc Id: XP_007959352   ⟸   XM_007961161
- UniProtKB: A0A0D9RXN9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000013378   ⟸   ENSCSAT00000015437


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017344 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015437.1 UniProtKB/TrEMBL
NCBI Gene ICE1 ENTREZGENE
PANTHER LITTLE ELONGATION COMPLEX SUBUNIT 1 UniProtKB/TrEMBL
  PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE UniProtKB/TrEMBL
UniProt A0A0D9RXN9 ENTREZGENE, UniProtKB/TrEMBL