PYGO1 (pygopus family PHD finger 1) - Rat Genome Database

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Gene: PYGO1 (pygopus family PHD finger 1) Chlorocebus sabaeus
Analyze
Symbol: PYGO1
Name: pygopus family PHD finger 1
RGD ID: 18480337
Description: ENCODES a protein that exhibits metal ion binding (inferred); methylated histone binding (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); kidney development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pygopus homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12627,886,926 - 27,934,303 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2627,888,233 - 27,927,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048113,346,779 - 113,394,849 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
PYGO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12627,886,926 - 27,934,303 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2627,888,233 - 27,927,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048113,346,779 - 113,394,849 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PYGO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381555,538,884 - 55,588,971 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1555,538,884 - 55,588,947 (-)EnsemblGRCh38hg38GRCh38
GRCh371555,831,082 - 55,881,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361553,625,513 - 53,668,342 (-)NCBINCBI36Build 36hg18NCBI36
Build 341553,625,512 - 53,668,342NCBI
Celera1532,726,797 - 32,769,567 (-)NCBICelera
Cytogenetic Map15q21.3NCBI
HuRef1532,662,511 - 32,705,142 (-)NCBIHuRef
CHM1_11555,956,666 - 55,999,485 (-)NCBICHM1_1
T2T-CHM13v2.01553,342,076 - 53,392,120 (-)NCBIT2T-CHM13v2.0
Pygo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39972,832,927 - 72,859,868 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl972,832,927 - 72,859,463 (+)EnsemblGRCm39 Ensembl
GRCm38972,925,645 - 72,952,586 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl972,925,645 - 72,952,181 (+)EnsemblGRCm38mm10GRCm38
MGSCv37972,773,457 - 72,793,822 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36972,722,777 - 72,743,664 (+)NCBIMGSCv36mm8
Celera970,111,470 - 70,131,954 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map940.08NCBI
Pygo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8882,546,866 - 82,565,526 (+)NCBIGRCr8
mRatBN7.2873,666,210 - 73,684,873 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl873,665,593 - 73,684,869 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx879,189,512 - 79,207,625 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0877,462,121 - 77,480,238 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0875,299,488 - 75,317,595 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0879,607,013 - 79,625,188 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl879,606,789 - 79,627,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0873,464,585 - 73,482,239 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4877,660,208 - 77,820,894 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera868,069,742 - 68,086,746 (-)NCBICelera
Cytogenetic Map8q24NCBI
Pygo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955409446,548 - 459,139 (+)NCBIChiLan1.0ChiLan1.0
PYGO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21644,800,496 - 44,851,148 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11548,982,644 - 49,034,167 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01534,509,787 - 34,556,686 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11552,831,520 - 52,879,658 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1552,838,651 - 52,879,630 (-)Ensemblpanpan1.1panPan2
PYGO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13020,889,246 - 20,919,512 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3020,895,785 - 20,919,863 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3020,853,683 - 20,884,618 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03021,039,180 - 21,070,161 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3021,044,745 - 21,070,334 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13020,982,333 - 21,013,291 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03021,066,236 - 21,097,251 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03021,198,534 - 21,229,525 (-)NCBIUU_Cfam_GSD_1.0
Pygo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864099,142,213 - 99,180,480 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647116,995,029 - 17,028,549 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647116,990,276 - 17,028,543 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYGO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1116,292,642 - 116,322,375 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11116,293,361 - 116,326,753 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21128,780,627 - 128,809,878 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pygo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247316,148,713 - 6,176,564 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247316,148,748 - 6,175,028 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 19 35 35 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000009776   ⟹   ENSCSAP00000007885
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2627,888,233 - 27,927,171 (+)Ensembl
RefSeq Acc Id: XM_008016518   ⟹   XP_008014709
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12627,887,762 - 27,934,303 (+)NCBI
Vero_WHO_p1.0NW_023666048113,346,779 - 113,394,349 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008016519   ⟹   XP_008014710
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12627,886,926 - 27,934,303 (+)NCBI
Vero_WHO_p1.0NW_023666048113,346,779 - 113,394,849 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008014709 (Get FASTA)   NCBI Sequence Viewer  
  XP_008014710 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007885
  ENSCSAP00000007885.1
RefSeq Acc Id: XP_008014710   ⟸   XM_008016519
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008014709   ⟸   XM_008016518
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RGZ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000007885   ⟸   ENSCSAT00000009776


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011684 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009776.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Wnt_Signal_Transd_Protein UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report csab:103245584 UniProtKB/TrEMBL
NCBI Gene PYGO1 ENTREZGENE
PANTHER PYGOPUS UniProtKB/TrEMBL
  PYGOPUS HOMOLOG 1 UniProtKB/TrEMBL
Pfam PHD UniProtKB/TrEMBL
PROSITE ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
UniProt A0A0D9RGZ6 ENTREZGENE, UniProtKB/TrEMBL