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Gene: CACHD1 (cache domain containing 1) Chlorocebus sabaeus

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Symbol:

CACHD1

Name:

cache domain containing 1

RGD ID:

18472586

Description:

ENCODES a protein that exhibits voltage-gated calcium channel activity (inferred); INVOLVED IN calcium ion transmembrane transport (inferred); ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred); voltage-gated calcium channel complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

VWFA and cache domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	68,389,853 - 68,615,603 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	68,387,320 - 68,614,512 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	48,910,968 - 49,136,487 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital disorder of glycosylation It (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transmembrane transport (IEA)

Cellular Component

membrane (IEA)

voltage-gated calcium channel complex (IEA)

Molecular Function

voltage-gated calcium channel activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CACHD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	68,389,853 - 68,615,603 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	68,387,320 - 68,614,512 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	48,910,968 - 49,136,487 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CACHD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	64,470,129 - 64,693,053 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	64,470,129 - 64,693,058 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	64,935,812 - 65,158,736 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	64,709,064 - 64,931,329 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	63,227,656 - 63,449,867 (+)	NCBI		Celera
Cytogenetic Map	1	p31.3	NCBI
HuRef	1	63,045,642 - 63,268,232 (+)	NCBI		HuRef
CHM1_1	1	65,052,974 - 65,275,155 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	64,347,926 - 64,571,142 (+)	NCBI		T2T-CHM13v2.0

Cachd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	100,633,870 - 100,861,741 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	100,633,872 - 100,886,417 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	100,776,679 - 101,003,749 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	100,776,675 - 101,029,220 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	100,449,284 - 100,676,354 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	100,274,611 - 100,501,681 (+)	NCBI		MGSCv36	mm8
Celera	4	99,130,229 - 99,356,059 (+)	NCBI		Celera
Cytogenetic Map	4	C6	NCBI
cM Map	4	45.76	NCBI

Cachd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	120,527,224 - 120,752,685 (+)	NCBI		GRCr8
mRatBN7.2	5	115,411,833 - 115,637,312 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	115,411,071 - 115,657,505 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	117,971,193 - 118,196,451 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	119,696,540 - 119,921,816 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	119,747,813 - 119,973,085 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	119,596,726 - 119,832,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	119,727,839 - 119,831,634 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	123,487,662 - 123,714,719 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	121,431,272 - 121,659,471 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	121,436,497 - 121,685,525 (+)	NCBI
Celera	5	113,955,541 - 114,180,443 (+)	NCBI		Celera
Cytogenetic Map	5	q33	NCBI

Cachd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	25,675,275 - 25,842,333 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	25,675,396 - 25,818,924 (-)	NCBI	ChiLan1.0	ChiLan1.0

CACHD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	162,165,312 - 162,388,480 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	161,316,156 - 161,538,805 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	63,720,955 - 63,944,557 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	65,609,836 - 65,834,142 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	65,609,838 - 65,834,138 (+)	Ensembl	panpan1.1		panPan2

CACHD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	45,554,740 - 45,676,324 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	45,556,477 - 45,676,655 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	45,612,175 - 45,813,740 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	45,730,653 - 45,932,295 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	45,731,917 - 45,933,015 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	45,695,151 - 45,895,690 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	45,641,894 - 45,842,155 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	45,897,027 - 46,099,100 (-)	NCBI		UU_Cfam_GSD_1.0

Cachd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	77,637,552 - 77,841,263 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936692	1,952,886 - 2,156,688 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936692	1,952,892 - 2,156,680 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CACHD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	147,775,073 - 148,305,330 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	147,774,934 - 148,010,916 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	136,115,440 - 136,181,894 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cachd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	29,820,592 - 29,993,927 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	29,819,338 - 29,994,114 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	18	34	34	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007978454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007978455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038000946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000017184 ⟹ ENSCSAP00000016668

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	68,387,320 - 68,614,512 (-)	Ensembl

RefSeq Acc Id:

XM_007978455 ⟹ XP_007976646

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	68,389,853 - 68,614,651 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	48,910,968 - 49,136,487 (+)	NCBI

Sequence:

show sequence

GCGGGGTGCGCCGAGCGGGCCCTGGGCGCACCTCCCGCGGCCCGCTTCCTGGCGCCCGGAGCCC
GTCGGCAGGGAGTTGGGGGAGGCAGCATGGCCCGCCAGCCGGAGGAAGAGGAGACGGCCGGGGC
CCGGGCGCTGCGGCCGCCCCTCTGGCTGCTCTGCCTGGTCGCGTGCTGGCTTCTGGGCGCCGGG
GCCGAAGCCGATTTCTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAGATGCGCAGGCTGG
CGGTCGAGGAGCTGGGGGTCGTCACCATGCAGCGGATATTCAACTCCTTTGTTTACACTGAGAA
AATCTCAAATGGAGAAAGTGAAGTACAGCAGCTAGCCAAAAAAATCCGAGAGAAGTTCAACCGT
TACTTGGATGTGGTCAATCGGAACAAGCAAGTTGTAGAAGCATCCTATACGGCTCACCTAACCT
CTCCCCTAACTGCAATTCAAGACTGCTGTACTATCCCACCTTCCATGATGGAGTTCGATGGGAG
CTTTAATACCAATGTGTCTAGAACAATTAGTTGTGATCGACTTTCTACTACTGTTAATAGCCGG
GCCTTCAATCCAGGACGAGACTTAAATTCAGTTCTTGCAGACAACCTGAAATCCAACCCTGGAA
TTAAGTGGCAGTATTTCAGTTCAGAAGAAGGAATTTTCACTGTTTTCCCAGCACACAAGTTCCG
GTGTAAGGGCAGCTACGAACACCGCAGTAGACCCATCTACGTCTCTACAGTCCGGCCTCAGTCA
AAGCACATAGTCGTGATTCTGGACCACGGGGCTTCAGTCACAGACACTCAGCTTCAGATTGCCA
AGGACGCTGCTCAGGTCATCCTCAGTGCCATCGATGAACATGACAAGATTTCTGTGTTAACTGT
GGCAGATACCGTCCGGACCTGCTCACTAGACCAGTGCTATAAGACCTTCTTGTCTCCAGCTACC
AGTGAGACAAAAAGGAAAATGTCTACCTTTGTTAGCAACGTGAAGTCTTCAGACAGTCCTACCC
AGCACGCAGTGGGATTCCAAAAGGCATTTCAGCTGATTCGAAGCACAAACAATAACACAAAGTT
CCAAGCAAATACAGACATGGTCATCATTTACCTGTCAGCTGGCATTACATCAAAGGACTCTTCG
GAAGAAGATAAAAAAGCAACTCTCCGAGTCATCAATGAAGAAAATAGCTTTCTAAACAACTCCG
TAATGATTCTCACCTATGCCCTCATGAACGATGGGGTGACTGGTTTGAAAGAACTGGCTTTTCT
GAGGGATCTAGCTGAACAGAATTCAGGGAAGTACGGTGTGCCAGACCGGACGGCCTTGCCTGTG
ATTAAGGGCAGCATGATGGTGCTGAACCAGTTGAGCAACCTGGAGACCACAGTGGGCAGGTTCT
ACACAAACCTTCCCAACCGGATGATTGATGAAGCCGTCTTCAGCCTCCCCTTCTCTGATGAGAT
GGGAGATGGTTTGATAATGACTGTGAGTAAACCCTGTTATTTTGGAAACCTACTTCTGGGAATT
GTAGGTGTGGACGTGAATCTGGCTTATATTCTTGAAGACGTGACATATTACCAAGACTCTTTGG
CTTCCTATACTTTTCTCATAGACGACAAAGGATATACACTTATGCACCCATCTCTTACCAGGCC
ATATTTATTATCAGAGCCCCCACTTCATACTGACATCATACATTATGAAAATATTCCAAAATTT
GAATTAGTTCGGCAAAATATCCTCAGCCTCCCTCTGGGCAGCCAGATTATCGCAGTCCCTGTGA
ACTCATCCCTGTCTTGGCACATAAACAAGCTGAGAGAAACTGGAAAGGAAGCCTACAATGTTAG
CTATGCCTGGAAGATGGTACAAGACACTTCCTTTATTCTGTGTATTGTGGTGATACAACCAGAA
ATACCTGTGAAACAACTGAAGAACCTCAACACTGTTCCCAGCAGCAAGCTGCTGTACCACCGGC
TGGATCTCCTGGGCCAACCCAGTGCTTGCCTCCACTTCAAACAGCTGGCAACCCTAGAAAGTCC
CACCGTCATGCTGTCTGCTGGCAGCTTTTCCTCCCCCTATGAGCACCTCAGCCAGCCAGAGACA
AAGCGCATGGTAGAGCACTACACCGCCTATCTCAGCGACAACACCCGCCTCATTGCTAACCCAG
GCCTTAAATTCTCTGTCAGAAATGAAGTAATGGCTACCAGCCACGTCACAGATGAATGGATGAC
ACAAATGGAAATGAGTAGCCTGAACACTTACATTGTCCGCCGTTACATAGCAACGCCCAATGGC
GTCCTCAGAATTTATCCTGGTTCCCTCATGGACAAAGCATTTGATCCCACCAGGAGACAATGGT
ATCTCCATGCGGTAGCTAATCCAGGGTTGATTTCTTTGACTGGTCCTTACTTAGATGTTGGAGG
AGCTGGTTATGTCGTGACAATCAGTCACACAATTCATTCGTCCAGTACACAGCTGTCTTCTGGG
CATACTGTGGCTGTGATGGGCATTGACTTCACACTCAGATACTTCTACAAAGTTCTGATGGACC
TGTTACCAGTCTGTAACCAAGATGGCGGCAACAAAATAAGGTGCTTCATAATGGAGGACAGGGG
TTATCTGGTGGCGCACCCAACTCTCATCGATCCCAAAGGACATGCACCTGTGGAGCAGCAGCAC
ATCACCCACAAGGAGCCCCTGGTAGCAAATGATATCCTCAACCACCCCAACTTTGTAAAGAAAA
ACCTGTGCAACAGCTTCAGTGACAGAACGGTCCAGAGGTTTTATAAATTCAACACCAGCCTTGC
GGGGGATTTGACGAACCTTGTGCATGGCAGCCACTGTTCCAAATACAGACTAGCAAGGATCCCA
GGAACCAATGCGTTTGTTGGCATTGTCAATGAAACCTGCGACTCTCTTGCCTTCTGTGCCTGCA
GCATGGTGGACCGGCTCTGTCTCAACTGTCACCGAATGGAACAAAACGAATGTGAATGTCCTTG
TGAGTGCCCTCTAGAGGTCAATGAGTGCACTGGCAACCTCACCAATGCAGAGAACCGAAACCCA
AGCTGTGAGGTCCACCAGGAGCCGGTGACATACACAGCTATTGACCCTGGCCTGCAAGATGCTC
TTCACCAGTGTGTCAACAGCAGGTGCAGTCAGAGGCTGGAAAGCGGGGACTGTTTTGGGGTGCT
GGATTGTGAATGGTGCATGGTGGACAGTGATGGAAAGACTCACCTGGACAAATCCTACTGTGCT
CCCCAGAAAGAATGCTTCGGGGGGATTGTGGGAGCCAAAAGTCCCTACGTTGATGACATGGGAG
CAATAGGTGATGAGGTGATCACATTAAACATGATTAAAAGCGCCCCCGTGGGTCCTGTGGCTGG
AGGGATCATGGGATGCATCATGGTCTTGGTCCTGGCGGTGTACGCCTACCGCCACCAGATTCAT
CGCCGGAGCCATCAGCATATGTCTCCTCTTGCTGCCCAAGAAATGTCAGTGCGTATGTCCAACC
TGGAGAATGACAGAGATGAAAGGGACGATGACAGCCACGAAGACAGAGGCATCATCAGCAACAC
TCGGTTTATAGCTGCGGTCATCGAACGACATGCACACAGTCCAGAAAGAAGGCGCCGCTACTGG
GGTCGATCAGGAACAGAAAGTGATCATGGTTACAGCACCATGAGCCCGCAGGAGGACAGTGAAA
ATCCTCCATGCAACAATGACCCCTTGTCAGCCGGGGTCGATGTGGGAAACCATGATGAGGACCT
AGACCTGGATACCCCCCCTCAGACTGCTGCCCTACTAAGTCACAAGTTCCACCACTACCGGTCA
CACCACCCTACACTTCATCATAGCCACCACTTACAGGCGGCCGTGACAGTACACACTGTTGATG
CAGAATGCTAACGATCTCCTCACCTCCACGCCAAGACAAGATCTGGGAGCTACAGAATGTTCTG
GAAAGAAAAAGAACCAGCTTAAAACCCACAGCAAGAGACTCCCTCGTGTTCGTACTTTGTGCAG
AGTTGTTTGAGTCATTTCCTGCCTGATGACATGGTTAAAAACAAGAGAAACAACAACACAGTCA
CATTTGTGAAGACGTGAGGCTGGTTCTGAAATGGAGGGGAAATAAGCCTGATGAACGAACCTGC
CATAACACTAATGGAAGGGAACAGAAGGCGAGCCTCCAAACACAGAGACGGAACCTGCAAGTGA
AGCTGAGCCAGAGGAATGTTCCGAAGAGCCAGAAGCATTCAGCTCTCCTTAACTGGAAGAGAGA
AAAATCTGCTCACCCAGAGACTGGAATGTGGCACATGCAGATACAAATGTGTGCGTTGAAGATT
TCACTTTGTTTCTTAGCGGTACCTGGATACCACAGTTGCTGTATGGAACTCATGTTATGCTCTA
AACGATGCATCTCAAAATTTCTAAGTAAAGGATTATTTTTCTACTATTTATTGAACTTTCAAAT
ATTCTCAAACTTTGGGGAAAAGGAAAGGAAACACAGGAGAAGTTTTCAGCAGTTGCCCCGAGCT
ATTTTGTGTGTAATGAAGTGATTCTTTGATTAAGGAGCTCTATTTCTTATTTAACTGATATCCC
ACTGCCCCACTCCACAAAATAGGAAAATGAAGAAATCTTTCCCTCTGACTTGTTTACATCATTT
CATGGAAACACATCTTTATTTGTAATGCAGTATTCTTTCTCTGTGTTTGACAGAGATGGGGAAG
GGCAGAGGAATCTAAGAGGTTTTAAAAGAAATGTTACGTTTCTTATGACTTGTTTCCACTCCTC
GCACAATGCTAGTCTTAGGTTTCTACGAAACCTAATGTTAGAACCGCACCCTTTCAGCTAAGGG
AGGGTTGGATTTATTTTCCTTGTTTTAGAGACTACAAATTTTTAAATGTCCCATTTCGACTGAG
AATACTGACATATAAGGGAAGAAGTTTTCTAAATTGTGAATGTCTGGTTCTTAATTAAAGATTT
TTTTTTAATATTACAGTTAAAAGCTGCTGCCAGTTATCCAAGACATTATCCACCAAACTGCTTT
GTGATTTATACAGGGACTAATCAAATCTGGCTACTATAACATGGGGCATTGTAACTTTAAAGTA
GTGTTTTAATTACAGTGATGTATTTTAGACTCACATTTTGTGATTCAAATATGTTATAAAGACA
TTCTTGCACCGTGGTAAAGAATGTGTGTGGTAAATCTCCGTTTATATGTAGTTGGAAAAAATTC
ACTGAATGATGTTTTAATGATAGGGTGTTATGATACAGTGTAAAAAACAATTGGTTCTTCAGCA
GTACAGAAAGTAAACTATATATGTGCTATCAGGAAACCCCTTCATACTGTGTATAAAATTGCAG
TCTAGTGAAATAAACTGTATGCAACAGACCA

hide sequence

RefSeq Acc Id:

XM_038000946 ⟹ XP_037856874

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	48,946,558 - 49,136,487 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007976646	(Get FASTA)	NCBI Sequence Viewer
	XP_037856874	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016668
	ENSCSAP00000016668.1

RefSeq Acc Id:	XP_007976646 ⟸ XM_007978455
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S729 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000016668 ⟸ ENSCSAT00000017184

RefSeq Acc Id:	XP_037856874 ⟸ XM_038000946
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9S729 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001349	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017184.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.410	UniProtKB/TrEMBL
	PAS domain	UniProtKB/TrEMBL
InterPro	Ca_channel_alpha-2/delta	UniProtKB/TrEMBL
	Sensor-like_sf	UniProtKB/TrEMBL
	VWF_A	UniProtKB/TrEMBL
	vWFA_dom_sf	UniProtKB/TrEMBL
NCBI Gene	CACHD1	ENTREZGENE
PANTHER	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED	UniProtKB/TrEMBL
	VWFA AND CACHE DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
PROSITE	VWFA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103190	UniProtKB/TrEMBL
	SSF53300	UniProtKB/TrEMBL
UniProt	A0A0D9S729	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar