RIN1 (Ras and Rab interactor 1) - Rat Genome Database

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Gene: RIN1 (Ras and Rab interactor 1) Chlorocebus sabaeus
Analyze
Symbol: RIN1
Name: Ras and Rab interactor 1
RGD ID: 18450246
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); guanyl-nucleotide exchange factor activity (inferred); small GTPase binding (inferred); INVOLVED IN associative learning (ortholog); memory (ortholog); negative regulation of synaptic plasticity (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,940,856 - 7,945,419 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,941,082 - 7,945,206 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,221,908 - 105,226,655 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,940,856 - 7,945,419 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,941,082 - 7,945,206 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,221,908 - 105,226,655 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,330,241 - 66,336,774 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,330,241 - 66,336,840 (-)EnsemblGRCh38hg38GRCh38
GRCh371166,097,712 - 66,104,245 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,856,118 - 65,860,576 (-)NCBINCBI36Build 36hg18NCBI36
Build 341165,856,128 - 65,860,576NCBI
Celera1163,419,443 - 63,423,901 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1162,424,782 - 62,429,240 (-)NCBIHuRef
CHM1_11165,983,660 - 65,988,118 (-)NCBICHM1_1
T2T-CHM13v2.01166,323,896 - 66,330,429 (-)NCBIT2T-CHM13v2.0
Rin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,100,035 - 5,107,100 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,100,509 - 5,107,099 (+)EnsemblGRCm39 Ensembl
GRCm38195,049,999 - 5,057,071 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,050,481 - 5,057,071 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,050,808 - 5,057,071 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,050,808 - 5,057,071 (+)NCBIMGSCv36mm8
Celera194,919,912 - 4,926,173 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.23NCBI
Rin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,785,107 - 211,789,755 (+)NCBIGRCr8
mRatBN7.21202,355,729 - 202,362,731 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,355,890 - 202,362,729 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,708,821 - 210,713,469 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,801,155 - 217,805,803 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,492,186 - 210,496,834 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,335,036 - 220,342,319 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,335,254 - 220,342,297 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,428,481 - 220,433,129 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,359,504 - 227,364,152 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,671,502 - 207,676,150 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,824,954 - 207,829,599 (+)NCBI
Celera1199,895,635 - 199,900,283 (+)NCBICelera
Cytogenetic Map1q43NCBI
Rin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,990,698 - 18,997,838 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,989,814 - 18,996,570 (+)NCBIChiLan1.0ChiLan1.0
RIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,566,105 - 67,571,306 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,608,786 - 68,613,980 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,697,751 - 61,702,501 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,023,138 - 65,027,841 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,023,138 - 65,027,605 (-)Ensemblpanpan1.1panPan2
RIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,975,002 - 50,982,052 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,975,814 - 50,980,381 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,583,999 - 49,591,937 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,013,856 - 52,021,793 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,014,292 - 52,020,604 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,113,972 - 51,121,908 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,688,080 - 50,696,013 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,478,230 - 51,486,168 (+)NCBIUU_Cfam_GSD_1.0
Rin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,824,947 - 6,831,627 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,268,122 - 3,272,444 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,267,223 - 3,274,359 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.126,053,875 - 6,061,051 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,130,436 - 5,138,504 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,044,820 - 20,051,764 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,044,056 - 20,050,868 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000006210   ⟹   ENSCSAP00000004417
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl17,941,082 - 7,945,206 (+)Ensembl
RefSeq Acc Id: XM_007975890   ⟹   XP_007974081
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.117,940,856 - 7,945,419 (+)NCBI
Vero_WHO_p1.0NW_023666038105,221,908 - 105,226,655 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007975963   ⟹   XP_007974154
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.117,941,083 - 7,945,419 (+)NCBI
Vero_WHO_p1.0NW_023666038105,222,286 - 105,226,655 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007974081 (Get FASTA)   NCBI Sequence Viewer  
  XP_007974154 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004417
  ENSCSAP00000004417.1
RefSeq Acc Id: XP_007974081   ⟸   XM_007975890
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R728 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007974154   ⟸   XM_007975963
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000004417   ⟸   ENSCSAT00000006210


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008180 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006210.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1050.80 UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/TrEMBL
InterPro RA_dom UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
  Vps9-like UniProtKB/TrEMBL
  VPS9_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103223351 UniProtKB/TrEMBL
NCBI Gene RIN1 ENTREZGENE
PANTHER PTHR23101 UniProtKB/TrEMBL
  RAS AND RAB INTERACTOR 1 UniProtKB/TrEMBL
Pfam PF00788 UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
PROSITE PS50200 UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
SMART SH2 UniProtKB/TrEMBL
  SM00314 UniProtKB/TrEMBL
  VPS9 UniProtKB/TrEMBL
Superfamily-SCOP SSF109993 UniProtKB/TrEMBL
  SSF55550 UniProtKB/TrEMBL
UniProt A0A0D9R728 ENTREZGENE, UniProtKB/TrEMBL