GADL1 (glutamate decarboxylase like 1) - Rat Genome Database

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Gene: GADL1 (glutamate decarboxylase like 1) Chlorocebus sabaeus
Analyze
Symbol: GADL1
Name: glutamate decarboxylase like 1
RGD ID: 18447743
Description: ENCODES a protein that exhibits carboxy-lyase activity (inferred); pyridoxal phosphate binding (inferred); INVOLVED IN carboxylic acid metabolic process (inferred); ASSOCIATED WITH amenorrhea (ortholog); Liver Neoplasms (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acidic amino acid decarboxylase GADL1; glutamate decarboxylase-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11575,237,681 - 75,407,007 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1575,237,675 - 75,405,706 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604148,525,775 - 48,693,030 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GADL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11575,237,681 - 75,407,007 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1575,237,675 - 75,405,706 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604148,525,775 - 48,693,030 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GADL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38330,726,197 - 30,894,661 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl330,726,197 - 30,894,661 (-)EnsemblGRCh38hg38GRCh38
GRCh37330,767,689 - 30,936,153 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36330,742,696 - 30,867,341 (-)NCBINCBI36Build 36hg18NCBI36
Build 34330,742,695 - 30,867,341NCBI
Celera330,704,622 - 30,873,129 (-)NCBICelera
Cytogenetic Map3p24.1-p23NCBI
HuRef330,710,278 - 30,878,749 (-)NCBIHuRef
CHM1_1330,717,842 - 30,886,283 (-)NCBICHM1_1
T2T-CHM13v2.0330,728,666 - 30,897,141 (-)NCBIT2T-CHM13v2.0
Gadl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399115,713,739 - 115,905,244 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9115,713,947 - 115,905,243 (+)EnsemblGRCm39 Ensembl
GRCm389115,884,671 - 116,076,176 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9115,909,455 - 116,076,176 (+)EnsemblGRCm38mm10GRCm38
MGSCv379115,818,573 - 115,985,294 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369115,757,262 - 115,923,048 (+)NCBIMGSCv36mm8
Celera9116,371,831 - 116,537,330 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map968.25NCBI
Gadl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88124,483,736 - 124,663,815 (+)NCBIGRCr8
mRatBN7.28115,605,609 - 115,785,676 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8115,605,873 - 115,784,410 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.08123,989,822 - 124,301,366 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08123,477,133 - 123,574,752 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.08123,277,396 - 123,349,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48120,428,678 - 120,579,318 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8114,821,749 - 115,000,979 (+)NCBICelera
Cytogenetic Map8q32NCBI
Gadl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543022,029,450 - 22,188,133 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543022,029,481 - 22,187,807 (-)NCBIChiLan1.0ChiLan1.0
GADL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2230,715,117 - 30,884,075 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1330,719,883 - 30,888,841 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0330,655,701 - 30,824,656 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1330,975,196 - 31,141,989 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl330,975,196 - 31,142,703 (-)Ensemblpanpan1.1panPan2
GADL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12313,697,028 - 13,859,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2313,696,741 - 13,859,358 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2313,679,835 - 13,843,060 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02313,991,743 - 14,155,351 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2313,991,208 - 14,155,102 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12313,797,043 - 13,952,697 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02313,935,335 - 14,098,638 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02313,953,699 - 14,117,051 (+)NCBIUU_Cfam_GSD_1.0
Gadl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118188,290,697 - 188,756,622 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647321,431,071 - 21,563,226 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647321,430,668 - 21,563,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GADL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1316,892,163 - 17,049,305 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11316,892,162 - 17,049,314 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21319,042,596 - 19,105,789 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Gadl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247888,577,761 - 8,754,206 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247888,577,832 - 8,753,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GADL1
4924 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
71 35 18 33 33 56 20

Sequence


Ensembl Acc Id: ENSCSAT00000007721   ⟹   ENSCSAP00000005888
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1575,237,675 - 75,405,706 (-)Ensembl
RefSeq Acc Id: XM_008009354   ⟹   XP_008007545
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11575,237,681 - 75,407,007 (-)NCBI
Vero_WHO_p1.0NW_02366604148,525,775 - 48,693,030 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008007545 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005888
  ENSCSAP00000005888.1
RefSeq Acc Id: XP_008007545   ⟸   XM_008009354
- UniProtKB: A0A0D9RB99 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000005888   ⟸   ENSCSAT00000007721


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009641 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007721.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.170 UniProtKB/TrEMBL
InterPro PyrdxlP-dep_de-COase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  Pyridoxal-P_BS UniProtKB/TrEMBL
KEGG Report csab:103241809 UniProtKB/TrEMBL
NCBI Gene GADL1 ENTREZGENE
PANTHER GLUTAMATE DECARBOXYLASE-RELATED UniProtKB/TrEMBL
  PTHR45677:SF1 UniProtKB/TrEMBL
Pfam Pyridoxal_deC UniProtKB/TrEMBL
PROSITE DDC_GAD_HDC_YDC UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt A0A0D9RB99 ENTREZGENE, UniProtKB/TrEMBL