LMO2 (LIM domain only 2) - Rat Genome Database

Name: LMO2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: LMO2 (LIM domain only 2) Chlorocebus sabaeus

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Symbol:

LMO2

Name:

LIM domain only 2

RGD ID:

18438401

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN embryonic hemopoiesis (ortholog); negative regulation of erythrocyte differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

rhombotin-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LMO2 (LIM domain only 2)	NCBI	Ortholog
Mus musculus (house mouse):	Lmo2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lmo2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lmo2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LMO2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LMO2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lmo2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LMO2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lmo2 (LIM domain only 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	31,382,437 - 31,416,256 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	31,404,872 - 31,416,883 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	128,481,321 - 128,514,918 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute lymphoblastic leukemia (ISO)

COVID-19 (ISO)

Experimental Liver Cirrhosis (ISO)

intellectual disability (ISO)

T-cell acute lymphoblastic leukemia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

embryonic hemopoiesis (ISO)

negative regulation of erythrocyte differentiation (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

Cellular Component

nucleus (IEA)

protein-containing complex (ISO)

transcription regulator complex (IEA)

Molecular Function

bHLH transcription factor binding (IEA)

chromatin binding (ISO)

DNA binding (ISO)

DNA-binding transcription factor binding (IEA)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA)

transcription coactivator activity (IEA)

transcription coregulator binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LMO2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	31,382,437 - 31,416,256 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	31,404,872 - 31,416,883 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	128,481,321 - 128,514,918 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LMO2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	33,858,576 - 33,892,076 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	33,858,576 - 33,892,076 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	33,880,122 - 33,913,623 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	33,836,698 - 33,870,412 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	33,836,700 - 33,870,412	NCBI
Celera	11	34,027,627 - 34,061,421 (-)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	33,576,315 - 33,610,063 (-)	NCBI		HuRef
CHM1_1	11	33,879,643 - 33,913,368 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	33,995,616 - 34,029,225 (-)	NCBI		T2T-CHM13v2.0

Lmo2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	103,788,309 - 103,812,223 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	103,788,331 - 103,812,223 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	103,957,903 - 103,981,878 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	103,957,986 - 103,981,878 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	103,798,152 - 103,822,035 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	103,771,062 - 103,782,713 (+)	NCBI		MGSCv36	mm8
Celera	2	105,204,167 - 105,227,999 (+)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	54.46	NCBI

Lmo2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	110,810,162 - 110,832,895 (+)	NCBI		GRCr8
mRatBN7.2	3	90,355,234 - 90,377,970 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	90,365,883 - 90,377,953 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	93,848,260 - 93,870,995 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	102,447,339 - 102,470,072 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	100,277,857 - 100,300,590 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	93,909,156 - 93,931,888 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	93,909,156 - 93,931,871 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	100,549,307 - 100,572,039 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	89,356,199 - 89,367,641 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	89,252,944 - 89,263,314 (+)	NCBI
Celera	3	89,416,677 - 89,439,412 (+)	NCBI		Celera
Cytogenetic Map	3	q32	NCBI

Lmo2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	12,354,845 - 12,362,470 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	12,354,865 - 12,362,026 (+)	NCBI	ChiLan1.0	ChiLan1.0

LMO2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	36,077,833 - 36,110,953 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	36,082,565 - 36,115,729 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	33,830,370 - 33,863,960 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	33,712,099 - 33,720,729 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

LMO2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	18	33,481,882 - 33,492,473 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	34,487,785 - 34,497,780 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	34,486,702 - 34,497,791 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	34,045,610 - 34,056,746 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	33,639,096 - 33,649,686 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	34,274,467 - 34,285,055 (+)	NCBI		UU_Cfam_GSD_1.0

Lmo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	30,982,272 - 30,992,326 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	4,107,067 - 4,117,222 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	4,107,073 - 4,117,121 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LMO2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	27,044,763 - 27,055,453 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	27,033,924 - 27,055,457 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	29,401,270 - 29,422,801 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Lmo2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	13,245,984 - 13,257,440 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	13,245,783 - 13,257,322 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008002411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008002421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008002431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008002434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000003402 ⟹ ENSCSAP00000001680

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	1	31,404,872 - 31,416,883 (+)	Ensembl

RefSeq Acc Id:

XM_008002411 ⟹ XP_008000602

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	31,382,922 - 31,416,256 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	128,482,054 - 128,514,918 (+)	NCBI

Sequence:

show sequence

ACGGTGAGTCAGGCGCTTGCTGTGTGAGCCGCTGGTTGCTAATGTCTTCGGGAACTGCTAATTT
ACCCATTTAATTTGTTCCTGTACACTGGCCACAAAGGGAGACCACTCAATTATTCTGATCCAAA
AGAGAGGCTTGTGTTTACCATGATCTCCCCAGCAACTGTGTGAGAGTGTGTGCATGTGTGTGTG
TGTTTGCCTAACAACCTTAGGCAATGAAGAAGAGGTGGGGTTGCTGTCCTTGTTAGCATTTTCA
AACACATTCCAGTTCTGAGTTGAGGACAAAGATTGTAATGGGGTGCTTCAGAAAAGCCTTGGCT
CCCAAGGAGGTTATAACTTCAAGGGGTGTTTTTGAAAAACCAAGGTGGATGGGGAAAGTGGCTA
CAAGTTCCTTCTATCACAGAGGATCAATGAAGGGGAACAAACATTTGGGAGTATCTACTTTGTG
CCAGGAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCCCGAGAG
AGGAGGAAGCCCGGGGAGAGACGCACGGTCCCCTCCCCGCCCCCAGGCCGCCGCCCCCGTTCTG
CCCTCGGCGGCGAGCAGCGCGCCGCGACCCGGGCCGAAGGGAGCGCGGTGACTGTCCTTGAGCG
CGGAGGGGCGAGCTCGCCGCCTGAGCGCCGGAGCAAGCGGAGGCGCAGGAGCGGCGGCGGCGGC
GCCCGAGCACCCGAGGGGGTCCGAGCCCCGGCAGCCGGCCAGCCCCGCGCCACAAAGGGAGCGC
CCCTGCCGCCCGGCACGCCGCCTCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGA
CCCTTCAGAGGAACCAGTGGATGAGGTGCTGCAGATCCCCCCGTCCCTGCTGACATGCGGCGGC
TGCCAGCAGAATATCGGGGACCGCTACTTCCTGAAGGCCATCGACCAGTACTGGCACGAGGACT
GCCTGAGCTGCGACCTCTGTGGCTGCCGGCTGGGCGAGGTGGGGCGGCGCCTCTACTACAAACT
GGGCCGGAAGCTCTGCCGGAGAGACTATCTCAGGCTTTTTGGGCAAGACGGTCTCTGCGCATCC
TGTGACAAACGGATTCGTGCCTATGAGATGACGATGCGGGTGAAAGACAAAGTGTATCACCTGG
AATGTTTCAAATGTGCCGCCTGTCAGAAGCATTTCTGTGTAGGTGACAGATACCTCCTCATCAA
CTCCGACATAGTGTGCGAACAGGACATCTACGAGTGGACTAAGATCAATGGGATGATATAGGCC
CGAGTCCCCGGGCATCTTTGGGGAGGTGTTCACTGAAGACACCGTCTCCATGGCATCTTCGTCT
TCACTCTTAGGCACTTTGGGGGTTTGAGGGTGGGGTAAGGGTTTTCTTAGGGGATGGTAGACCT
TTATTGGGTACCAAGGCGTAGCATCCAAGTGGCATAATTCAAGGGCTGGCACTTCAAGGTGACA
GAGGACCAGCCCTTAAGGGAGAGCTTGCAGCCACAGCCATCCGTGGTAACTGACATGATTAGCA
GAAGAAAGGAACATTTAGGGGCAAGCAGGCACTGTACGGTCATGATGGAATTTCATATCCACAG
ATAGGGAGTTGTTGTGTAAAGACTTGTTGTGACTTTGATGCTTGCAAACTAGAGATGTGCAATT
GATTTCTTTTCTTCCTGGGTTTTGTAACACCCCTGTTTCAATGACTGTCCTCCACACAAGGGAA
GGACAGAAAGGAGTGGCCATTCTTTTTTTCTTGGCCTCCTTCCCAGGGCCTTAAGCTTTGGACC
CAAGGAAAACTGCATGGAGACACATTTCGGTTGAGAATGGAAACCACAACTTTTAACCAAACAA
TTATTTAAAGCAATGCTGATGAATCACTGTTTTTAGACACCTTCATTTCGAGGTGAGGAGCTCC
ACAGATTGTTTCTATACAAATATAAATCTTAAAAAAAAAGTTGTTCAACTATTTTATTATCCTA
GATTATATCAAAGTATTTGTCGTGTGTAGAAAAAAAAAAACCAGCTCTGCAGGCTTAATAAAAA
TGACAGACTGAAA

hide sequence

RefSeq Acc Id:

XM_008002421 ⟹ XP_008000612

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	31,382,437 - 31,416,256 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	128,481,321 - 128,514,918 (+)	NCBI

Sequence:

show sequence

AACATCCTCAAAGAACAGCAACGGGCCTTGAGCAGAATTGAGAAGGAAACACCCCCACCTGCCC
TCAGCCTTGAAGTAGGCTTTGCTATTCACAAGGGCCCGTGGGTGTCCTGGCAGAGAGGAGATGG
CACAGGCACCAGGTGCTAGGGTGCCAGGGCCTCCCGAGAAGAAACAGGTGCAAAGCAGGCAATT
AGCCCAGAAGGTATCCGTGGGGCAGGCAGCCTAGATCTGATGGGGGAAGCCACCAGGATTACAT
CATCTGCGGAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCGAAAATAGACCTTCCCG
AGAGAGGAGGAAGCCCGGGGAGAGACGCACGGTCCCCTCCCCGCCCCCAGGCCGCCGCCCCCGT
TCTGCCCTCGGCGGCGAGCAGCGCGCCGCGACCCGGGCCGAAGGGAGCGCGGTGACTGTCCTTG
AGCGCGGAGGGGCGAGCTCGCCGCCTGAGCGCCGGAGCAAGCGGAGGCGCAGGAGCGGCGGCGG
CGGCGCCCGAGCACCCGAGGGGGTCCGAGCCCCGGCAGCCGGCCAGCCCCGCGCCACAAAGGGA
GCGCCCCTGCCGCCCGGCACGCCGCCTCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCC
TGGACCCTTCAGAGGAACCAGTGGATGAGGTGCTGCAGATCCCCCCGTCCCTGCTGACATGCGG
CGGCTGCCAGCAGAATATCGGGGACCGCTACTTCCTGAAGGCCATCGACCAGTACTGGCACGAG
GACTGCCTGAGCTGCGACCTCTGTGGCTGCCGGCTGGGCGAGGTGGGGCGGCGCCTCTACTACA
AACTGGGCCGGAAGCTCTGCCGGAGAGACTATCTCAGGCTTTTTGGGCAAGACGGTCTCTGCGC
ATCCTGTGACAAACGGATTCGTGCCTATGAGATGACGATGCGGGTGAAAGACAAAGTGTATCAC
CTGGAATGTTTCAAATGTGCCGCCTGTCAGAAGCATTTCTGTGTAGGTGACAGATACCTCCTCA
TCAACTCCGACATAGTGTGCGAACAGGACATCTACGAGTGGACTAAGATCAATGGGATGATATA
GGCCCGAGTCCCCGGGCATCTTTGGGGAGGTGTTCACTGAAGACACCGTCTCCATGGCATCTTC
GTCTTCACTCTTAGGCACTTTGGGGGTTTGAGGGTGGGGTAAGGGTTTTCTTAGGGGATGGTAG
ACCTTTATTGGGTACCAAGGCGTAGCATCCAAGTGGCATAATTCAAGGGCTGGCACTTCAAGGT
GACAGAGGACCAGCCCTTAAGGGAGAGCTTGCAGCCACAGCCATCCGTGGTAACTGACATGATT
AGCAGAAGAAAGGAACATTTAGGGGCAAGCAGGCACTGTACGGTCATGATGGAATTTCATATCC
ACAGATAGGGAGTTGTTGTGTAAAGACTTGTTGTGACTTTGATGCTTGCAAACTAGAGATGTGC
AATTGATTTCTTTTCTTCCTGGGTTTTGTAACACCCCTGTTTCAATGACTGTCCTCCACACAAG
GGAAGGACAGAAAGGAGTGGCCATTCTTTTTTTCTTGGCCTCCTTCCCAGGGCCTTAAGCTTTG
GACCCAAGGAAAACTGCATGGAGACACATTTCGGTTGAGAATGGAAACCACAACTTTTAACCAA
ACAATTATTTAAAGCAATGCTGATGAATCACTGTTTTTAGACACCTTCATTTCGAGGTGAGGAG
CTCCACAGATTGTTTCTATACAAATATAAATCTTAAAAAAAAAGTTGTTCAACTATTTTATTAT
CCTAGATTATATCAAAGTATTTGTCGTGTGTAGAAAAAAAAAAACCAGCTCTGCAGGCTTAATA
AAAATGACAGACTGAAA

hide sequence

RefSeq Acc Id:

XM_008002431 ⟹ XP_008000622

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	31,392,780 - 31,416,256 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	128,491,680 - 128,514,918 (+)	NCBI

Sequence:

show sequence

TAGCTGTCTAAACCAGAGGGCTCCTCTCATATTCTTTCAGTAACAACTGCTCTGAAAAGAAGGT
ATTTTTCAACCTGGACTTGAAGTAACTAGTGGAGAGGCAGGAAAAAGGAAATGAAACCAGAGAC
AGAGGGAAGCTGAGCGAAAATAGACCTTCCCGAGAGAGGAGGAAGCCCGGGGAGAGACGCACGG
TCCCCTCCCCGCCCCCAGGCCGCCGCCCCCGTTCTGCCCTCGGCGGCGAGCAGCGCGCCGCGAC
CCGGGCCGAAGGTGCGAGGGGCTCGGGGCGGCCGGGCGGGCGCGCACCATCCCCGCGGGCGGCG
CGGAGCCGGCGACAGCGCGCGAGAGGGACCGGGCGGCGGAGGCGGCGGGACCGGGATGGAAGGG
AGCGCGGTGACTGTCCTTGAGCGCGGAGGGGCGAGCTCGCCGCCTGAGCGCCGGAGCAAGCGGA
GGCGCAGGAGCGGCGGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGCCCCGGCAGCCGGCCA
GCCCCGCGCCACAAAGGGAGCGCCCCTGCCGCCCGGCACGCCGCCTCCCTCCCCAATGTCCTCG
GCCATCGAAAGGAAGAGCCTGGACCCTTCAGAGGAACCAGTGGATGAGGTGCTGCAGATCCCCC
CGTCCCTGCTGACATGCGGCGGCTGCCAGCAGAATATCGGGGACCGCTACTTCCTGAAGGCCAT
CGACCAGTACTGGCACGAGGACTGCCTGAGCTGCGACCTCTGTGGCTGCCGGCTGGGCGAGGTG
GGGCGGCGCCTCTACTACAAACTGGGCCGGAAGCTCTGCCGGAGAGACTATCTCAGGCTTTTTG
GGCAAGACGGTCTCTGCGCATCCTGTGACAAACGGATTCGTGCCTATGAGATGACGATGCGGGT
GAAAGACAAAGTGTATCACCTGGAATGTTTCAAATGTGCCGCCTGTCAGAAGCATTTCTGTGTA
GGTGACAGATACCTCCTCATCAACTCCGACATAGTGTGCGAACAGGACATCTACGAGTGGACTA
AGATCAATGGGATGATATAGGCCCGAGTCCCCGGGCATCTTTGGGGAGGTGTTCACTGAAGACA
CCGTCTCCATGGCATCTTCGTCTTCACTCTTAGGCACTTTGGGGGTTTGAGGGTGGGGTAAGGG
TTTTCTTAGGGGATGGTAGACCTTTATTGGGTACCAAGGCGTAGCATCCAAGTGGCATAATTCA
AGGGCTGGCACTTCAAGGTGACAGAGGACCAGCCCTTAAGGGAGAGCTTGCAGCCACAGCCATC
CGTGGTAACTGACATGATTAGCAGAAGAAAGGAACATTTAGGGGCAAGCAGGCACTGTACGGTC
ATGATGGAATTTCATATCCACAGATAGGGAGTTGTTGTGTAAAGACTTGTTGTGACTTTGATGC
TTGCAAACTAGAGATGTGCAATTGATTTCTTTTCTTCCTGGGTTTTGTAACACCCCTGTTTCAA
TGACTGTCCTCCACACAAGGGAAGGACAGAAAGGAGTGGCCATTCTTTTTTTCTTGGCCTCCTT
CCCAGGGCCTTAAGCTTTGGACCCAAGGAAAACTGCATGGAGACACATTTCGGTTGAGAATGGA
AACCACAACTTTTAACCAAACAATTATTTAAAGCAATGCTGATGAATCACTGTTTTTAGACACC
TTCATTTCGAGGTGAGGAGCTCCACAGATTGTTTCTATACAAATATAAATCTTAAAAAAAAAGT
TGTTCAACTATTTTATTATCCTAGATTATATCAAAGTATTTGTCGTGTGTAGAAAAAAAAAAAC
CAGCTCTGCAGGCTTAATAAAAATGACAGACTGAAA

hide sequence

RefSeq Acc Id:

XM_008002434 ⟹ XP_008000625

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	31,404,175 - 31,416,256 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	128,503,028 - 128,514,918 (+)	NCBI

Sequence:

show sequence

TCCGGGGCCCCCCGGTGCTCGGCGTCCGTGGACCTGGGATCTCGAACCTGGGACGGACTCAAAA
TCCACTTGGAACACTTGCATTTCTGAAAAAGGAAATGAAACCAGAGACAGAGGGAAGCTGAGCG
AAAATAGACCTTCCCGAGAGAGGAGGAAGCCCGGGGAGAGACGCACGGTCCCCTCCCCGCCCCC
AGGCCGCCGCCCCCGTTCTGCCCTCGGCGGCGAGCAGCGCGCCGCGACCCGGGCCGAAGGGAGC
GCGGTGACTGTCCTTGAGCGCGGAGGGGCGAGCTCGCCGCCTGAGCGCCGGAGCAAGCGGAGGC
GCAGGAGCGGCGGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGCCCCGGCAGCCGGCCAGCC
CCGCGCCACAAAGGGAGCGCCCCTGCCGCCCGGCACGCCGCCTCCCTCCCCAATGTCCTCGGCC
ATCGAAAGGAAGAGCCTGGACCCTTCAGAGGAACCAGTGGATGAGGTGCTGCAGATCCCCCCGT
CCCTGCTGACATGCGGCGGCTGCCAGCAGAATATCGGGGACCGCTACTTCCTGAAGGCCATCGA
CCAGTACTGGCACGAGGACTGCCTGAGCTGCGACCTCTGTGGCTGCCGGCTGGGCGAGGTGGGG
CGGCGCCTCTACTACAAACTGGGCCGGAAGCTCTGCCGGAGAGACTATCTCAGGCTTTTTGGGC
AAGACGGTCTCTGCGCATCCTGTGACAAACGGATTCGTGCCTATGAGATGACGATGCGGGTGAA
AGACAAAGTGTATCACCTGGAATGTTTCAAATGTGCCGCCTGTCAGAAGCATTTCTGTGTAGGT
GACAGATACCTCCTCATCAACTCCGACATAGTGTGCGAACAGGACATCTACGAGTGGACTAAGA
TCAATGGGATGATATAGGCCCGAGTCCCCGGGCATCTTTGGGGAGGTGTTCACTGAAGACACCG
TCTCCATGGCATCTTCGTCTTCACTCTTAGGCACTTTGGGGGTTTGAGGGTGGGGTAAGGGTTT
TCTTAGGGGATGGTAGACCTTTATTGGGTACCAAGGCGTAGCATCCAAGTGGCATAATTCAAGG
GCTGGCACTTCAAGGTGACAGAGGACCAGCCCTTAAGGGAGAGCTTGCAGCCACAGCCATCCGT
GGTAACTGACATGATTAGCAGAAGAAAGGAACATTTAGGGGCAAGCAGGCACTGTACGGTCATG
ATGGAATTTCATATCCACAGATAGGGAGTTGTTGTGTAAAGACTTGTTGTGACTTTGATGCTTG
CAAACTAGAGATGTGCAATTGATTTCTTTTCTTCCTGGGTTTTGTAACACCCCTGTTTCAATGA
CTGTCCTCCACACAAGGGAAGGACAGAAAGGAGTGGCCATTCTTTTTTTCTTGGCCTCCTTCCC
AGGGCCTTAAGCTTTGGACCCAAGGAAAACTGCATGGAGACACATTTCGGTTGAGAATGGAAAC
CACAACTTTTAACCAAACAATTATTTAAAGCAATGCTGATGAATCACTGTTTTTAGACACCTTC
ATTTCGAGGTGAGGAGCTCCACAGATTGTTTCTATACAAATATAAATCTTAAAAAAAAAGTTGT
TCAACTATTTTATTATCCTAGATTATATCAAAGTATTTGTCGTGTGTAGAAAAAAAAAAACCAG
CTCTGCAGGCTTAATAAAAATGACAGACTGAAA

hide sequence

RefSeq Acc Id:

XM_037999524 ⟹ XP_037855452

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666038	128,503,145 - 128,514,918 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008000602	(Get FASTA)	NCBI Sequence Viewer
	XP_008000612	(Get FASTA)	NCBI Sequence Viewer
	XP_008000622	(Get FASTA)	NCBI Sequence Viewer
	XP_008000625	(Get FASTA)	NCBI Sequence Viewer
	XP_037855452	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001680
	ENSCSAP00000001680.1

RefSeq Acc Id:	XP_008000612 ⟸ XM_008002421
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_008000602 ⟸ XM_008002411
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_008000622 ⟸ XM_008002431
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_008000625 ⟸ XM_008002434
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9QZ91 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000001680 ⟸ ENSCSAT00000003402

RefSeq Acc Id:	XP_037855452 ⟸ XM_037999524
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000005369	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000003402.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	LMO_RBTN_TF	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	LMO2	ENTREZGENE
PANTHER	LD11652P	UniProtKB/TrEMBL
	RHOMBOTIN-2	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A0D9QZ91	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

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