APOBEC3G (apolipoprotein B mRNA editing enzyme catalytic subunit 3G) - Rat Genome Database

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Gene: APOBEC3G (apolipoprotein B mRNA editing enzyme catalytic subunit 3G) Chlorocebus sabaeus
Analyze
Symbol: APOBEC3G
Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3G
RGD ID: 18437054
Description: ENCODES a protein that exhibits cytidine deaminase activity (inferred); hydrolase activity (inferred); identical protein binding (inferred); INVOLVED IN cytidine deamination (inferred); cytidine to uridine editing (inferred); defense response to virus (inferred); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); P-body (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DNA dC->dU-editing enzyme APOBEC-3G
RGD Orthologs
Human
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,717,867 - 21,732,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,717,889 - 21,732,839 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045104,027,776 - 104,038,061 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22264516   PMID:22301074   PMID:22726727   PMID:30032202  


Genomics

Comparative Map Data
APOBEC3G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,717,867 - 21,732,276 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,717,889 - 21,732,839 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045104,027,776 - 104,038,061 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
APOBEC3G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,077,005 - 39,087,743 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,077,067 - 39,087,743 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,473,010 - 39,483,748 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,803,082 - 37,813,694 (+)NCBINCBI36Build 36hg18NCBI36
Build 342237,797,635 - 37,808,247NCBI
Celera2223,275,044 - 23,285,782 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,440,372 - 22,451,110 (+)NCBIHuRef
CHM1_12239,431,972 - 39,442,708 (+)NCBICHM1_1
T2T-CHM13v2.02239,547,423 - 39,558,159 (+)NCBIT2T-CHM13v2.0
APOBEC3G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,916,836 - 48,935,652 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,608,323 - 51,627,146 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,977,184 - 19,994,769 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,767,291 - 37,812,023 (+)NCBIpanpan1.1PanPan1.1panPan2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000004410   ⟹   ENSCSAP00000002668
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1921,717,889 - 21,732,839 (+)Ensembl
RefSeq Acc Id: NM_001292076   ⟹   NP_001279005
RefSeq Status: VALIDATED
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045104,028,100 - 104,037,909 (-)NCBI
RefSeq Acc Id: XM_038006204   ⟹   XP_037862132
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045104,027,776 - 104,038,061 (-)NCBI
RefSeq Acc Id: XM_038006205   ⟹   XP_037862133
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045104,027,776 - 104,038,061 (-)NCBI
RefSeq Acc Id: XM_038006206   ⟹   XP_037862134
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045104,027,776 - 104,035,797 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001279005 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862132 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862133 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862134 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AEY75958 (Get FASTA)   NCBI Sequence Viewer  
  AEY75959 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002668.1
Ensembl Acc Id: ENSCSAP00000002668   ⟸   ENSCSAT00000004410
RefSeq Acc Id: XP_037862133   ⟸   XM_038006205
- Peptide Label: isoform X1
- UniProtKB: H2E0A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037862132   ⟸   XM_038006204
- Peptide Label: isoform X1
- UniProtKB: H2E0A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037862134   ⟸   XM_038006206
- Peptide Label: isoform X2
- UniProtKB: H2E0A2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001279005   ⟸   NM_001292076
- UniProtKB: H2E0A3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004410.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/TrEMBL
InterPro APOBEC/CMP_deaminase_Zn-bd UniProtKB/TrEMBL
  APOBEC_Cyt_Deaminase UniProtKB/TrEMBL
  CMP_dCMP_dom UniProtKB/TrEMBL
  Cytidine_deaminase-like UniProtKB/TrEMBL
KEGG Report csab:103223334 UniProtKB/TrEMBL
NCBI Gene APOBEC3G ENTREZGENE
PANTHER MRNA EDITING ENZYME UniProtKB/TrEMBL
  PTHR13857:SF20 UniProtKB/TrEMBL
Pfam NAD2 UniProtKB/TrEMBL
PROSITE CYT_DCMP_DEAMINASES_1 UniProtKB/TrEMBL
  CYT_DCMP_DEAMINASES_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53927 UniProtKB/TrEMBL
UniProt A0A0D9R229_CHLSB UniProtKB/TrEMBL
  H2E0A2 ENTREZGENE, UniProtKB/TrEMBL
  H2E0A3 ENTREZGENE, UniProtKB/TrEMBL