TREH (trehalase) - Rat Genome Database

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Gene: TREH (trehalase) Chlorocebus sabaeus
Analyze
Symbol: TREH
Name: trehalase
RGD ID: 18435446
Description: ENCODES a protein that exhibits alpha,alpha-trehalase activity (inferred); hydrolase activity, acting on glycosyl bonds (inferred); INVOLVED IN animal organ morphogenesis (ortholog); PARTICIPATES IN trehalose degradation pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,053,372 - 110,093,741 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,053,438 - 110,081,748 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,961,383 - 15,983,482 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TREH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,053,372 - 110,093,741 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,053,438 - 110,081,748 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,961,383 - 15,983,482 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TREH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,657,316 - 118,679,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,657,316 - 118,679,690 (-)EnsemblGRCh38hg38GRCh38
GRCh3711118,528,026 - 118,550,359 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,034,152 - 118,055,591 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411118,034,170 - 118,055,592NCBI
Celera11115,689,705 - 115,711,140 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,466,776 - 114,488,212 (-)NCBIHuRef
CHM1_111118,415,590 - 118,437,007 (-)NCBICHM1_1
T2T-CHM13v2.011118,676,537 - 118,698,868 (-)NCBIT2T-CHM13v2.0
Treh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,584,530 - 44,597,602 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,584,530 - 44,597,602 (+)EnsemblGRCm39 Ensembl
GRCm38944,673,233 - 44,686,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,673,233 - 44,686,305 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,481,321 - 44,494,387 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,424,233 - 44,437,299 (+)NCBIMGSCv36mm8
Celera941,937,586 - 41,950,678 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Treh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,886,946 - 53,901,113 (+)NCBIGRCr8
mRatBN7.2844,990,182 - 45,003,881 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,990,182 - 45,003,540 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,485,074 - 50,498,521 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,763,792 - 48,777,241 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,634,404 - 46,647,854 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,983,802 - 48,998,072 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,983,802 - 48,997,191 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,602,069 - 47,615,939 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,631,777 - 47,645,166 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,648,535 - 47,653,735 (+)NCBI
Celera844,575,089 - 44,588,475 (+)NCBICelera
Cytogenetic Map8q22NCBI
Treh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,801,376 - 19,814,305 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,801,153 - 19,815,394 (-)NCBIChiLan1.0ChiLan1.0
TREH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,362,401 - 119,388,872 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,467,411 - 120,493,907 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,496,561 - 113,519,230 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,426,597 - 117,448,445 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,426,597 - 117,448,445 (-)Ensemblpanpan1.1panPan2
TREH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,085,038 - 15,090,667 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,071,802 - 15,090,522 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,117,162 - 15,143,068 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,008,145 - 15,033,852 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,015,192 - 15,033,805 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,146,317 - 15,172,252 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,050,103 - 15,075,787 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,090,269 - 15,119,451 (+)NCBIUU_Cfam_GSD_1.0
Treh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,766,576 - 100,780,634 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,688,247 - 3,702,033 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,688,086 - 3,702,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TREH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,949,894 - 45,965,341 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,949,891 - 45,965,372 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,918,880 - 50,924,307 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Treh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,064,522 - 14,084,051 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,064,161 - 14,083,871 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TREH
587 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000000585   ⟹   ENSCSAP00000015477
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1110,053,438 - 110,081,748 (-)Ensembl
RefSeq Acc Id: XM_008021091   ⟹   XP_008019282
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11110,053,372 - 110,077,902 (-)NCBI
Vero_WHO_p1.0NW_02366604315,961,383 - 15,983,482 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008019282 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015477.1
RefSeq Acc Id: XP_008019282   ⟸   XM_008021091
- UniProtKB: A0A0D9S3N8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000015477   ⟸   ENSCSAT00000000585


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002566 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000585.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.10.10 UniProtKB/TrEMBL
InterPro 6-hairpin_glycosidase_sf UniProtKB/TrEMBL
  6hp_glycosidase-like_sf UniProtKB/TrEMBL
  Glyco_hydro_37 UniProtKB/TrEMBL
  Glyco_hydro_37_CS UniProtKB/TrEMBL
NCBI Gene TREH ENTREZGENE
PANTHER PTHR23403 UniProtKB/TrEMBL
  TREHALASE UniProtKB/TrEMBL
Pfam Trehalase UniProtKB/TrEMBL
PRINTS GLHYDRLASE37 UniProtKB/TrEMBL
PROSITE TREHALASE_1 UniProtKB/TrEMBL
  TREHALASE_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF48208 UniProtKB/TrEMBL
UniProt A0A0D9S3N8 ENTREZGENE, UniProtKB/TrEMBL