TREH (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 1 | 110,053,372 - 110,093,741 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 1 | 110,053,438 - 110,081,748 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666043 | 15,961,383 - 15,983,482 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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TREH (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 11 | 118,657,316 - 118,679,650 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 11 | 118,657,316 - 118,679,690 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 11 | 118,528,026 - 118,550,359 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 11 | 118,034,152 - 118,055,591 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 11 | 118,034,170 - 118,055,592 | NCBI | | | | | Celera | 11 | 115,689,705 - 115,711,140 (-) | NCBI | | Celera | | | Cytogenetic Map | 11 | q23.3 | NCBI | | | | | HuRef | 11 | 114,466,776 - 114,488,212 (-) | NCBI | | HuRef | | | CHM1_1 | 11 | 118,415,590 - 118,437,007 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 11 | 118,676,537 - 118,698,868 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Treh (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 9 | 44,584,530 - 44,597,602 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 9 | 44,584,530 - 44,597,602 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 9 | 44,673,233 - 44,686,305 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 9 | 44,673,233 - 44,686,305 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 9 | 44,481,321 - 44,494,387 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 9 | 44,424,233 - 44,437,299 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 9 | 41,937,586 - 41,950,678 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | A5.2 | NCBI | | | | | cM Map | 9 | 24.84 | NCBI | | | | |
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Treh (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 8 | 53,886,946 - 53,901,113 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 8 | 44,990,182 - 45,003,881 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 8 | 44,990,182 - 45,003,540 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 8 | 50,485,074 - 50,498,521 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 8 | 48,763,792 - 48,777,241 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 8 | 46,634,404 - 46,647,854 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 8 | 48,983,802 - 48,998,072 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 8 | 48,983,802 - 48,997,191 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 8 | 47,602,069 - 47,615,939 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 8 | 47,631,777 - 47,645,166 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 8 | 47,648,535 - 47,653,735 (+) | NCBI | | | | | Celera | 8 | 44,575,089 - 44,588,475 (+) | NCBI | | Celera | | | Cytogenetic Map | 8 | q22 | NCBI | | | | |
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Treh (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955412 | 19,801,376 - 19,814,305 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955412 | 19,801,153 - 19,815,394 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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TREH (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 9 | 119,362,401 - 119,388,872 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 11 | 120,467,411 - 120,493,907 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 11 | 113,496,561 - 113,519,230 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 11 | 117,426,597 - 117,448,445 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 11 | 117,426,597 - 117,448,445 (-) | Ensembl | panpan1.1 | | panPan2 | |
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TREH (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 5 | 15,085,038 - 15,090,667 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 5 | 15,071,802 - 15,090,522 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 5 | 15,117,162 - 15,143,068 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 5 | 15,008,145 - 15,033,852 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 5 | 15,015,192 - 15,033,805 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 5 | 15,146,317 - 15,172,252 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 5 | 15,050,103 - 15,075,787 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 5 | 15,090,269 - 15,119,451 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Treh (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024404947 | 100,766,576 - 100,780,634 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936542 | 3,688,247 - 3,702,033 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936542 | 3,688,086 - 3,702,067 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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TREH (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 9 | 45,949,894 - 45,965,341 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 9 | 45,949,891 - 45,965,372 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 9 | 50,918,880 - 50,924,307 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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Treh (Heterocephalus glaber - naked mole-rat) |
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