TMEM94 (transmembrane protein 94) - Rat Genome Database

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Gene: TMEM94 (transmembrane protein 94) Chlorocebus sabaeus
Analyze
Symbol: TMEM94
Name: transmembrane protein 94
RGD ID: 18421759
Description: ENCODES a protein that exhibits P-type magnesium transporter activity (inferred); INVOLVED IN embryonic brain development (ortholog); embryonic heart tube development (ortholog); intracellular magnesium ion homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Intellectual Developmental Disorder with Cardiac Defects and Dysmorphic Facies (ortholog); Nervous System Malformations (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein KIAA0195 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,178,237 - 46,223,931 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,177,181 - 46,202,463 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,944,169 - 17,031,905 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TMEM94
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,178,237 - 46,223,931 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,177,181 - 46,202,463 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,944,169 - 17,031,905 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TMEM94
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,456,635 - 75,500,452 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,441,159 - 75,500,452 (+)EnsemblGRCh38hg38GRCh38
GRCh371773,452,716 - 73,496,533 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,964,259 - 71,008,128 (+)NCBINCBI36Build 36hg18NCBI36
Celera1770,046,681 - 70,090,404 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,876,757 - 68,920,090 (+)NCBIHuRef
CHM1_11773,517,714 - 73,561,577 (+)NCBICHM1_1
T2T-CHM13v2.01776,350,056 - 76,393,782 (+)NCBIT2T-CHM13v2.0
Tmem94
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,656,245 - 115,689,859 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,656,259 - 115,690,192 (+)EnsemblGRCm39 Ensembl
GRCm3811115,765,419 - 115,799,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,765,433 - 115,799,366 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,626,747 - 115,660,347 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,581,608 - 115,615,123 (+)NCBIMGSCv36mm8
Celera11127,526,360 - 127,559,607 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
Tmem94
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,490,496 - 101,525,983 (+)NCBIGRCr8
mRatBN7.210100,991,523 - 101,027,046 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,991,573 - 101,027,394 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010104,313,691 - 104,320,809 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,320,743 - 104,343,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,970,622 - 103,972,363 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1099,571,676 - 99,579,063 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Tmem94
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555532,329,995 - 2,352,898 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555532,305,425 - 2,353,596 (+)NCBIChiLan1.0ChiLan1.0
TMEM94
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,499,570 - 91,542,950 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,322,719 - 96,365,298 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,407,161 - 69,449,735 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,957,741 - 75,000,604 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,972,761 - 75,000,598 (+)Ensemblpanpan1.1panPan2
TMEM94
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,031,459 - 5,067,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,945,418 - 5,055,648 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,710,790 - 5,746,606 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,701,574 - 5,737,383 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,617,104 - 5,737,347 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,740,676 - 5,776,491 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,850,826 - 5,886,641 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,911,936 - 5,947,750 (-)NCBIUU_Cfam_GSD_1.0
Tmem94
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,681,867 - 5,717,016 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594695,175 - 730,999 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594695,180 - 729,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM94
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,870,096 - 5,905,345 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,870,092 - 5,905,789 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,963,992 - 5,965,413 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tmem94
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,282,318 - 5,305,525 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,262,610 - 5,306,230 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008011747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008011753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037993832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000002779   ⟹   ENSCSAP00000001072
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1646,177,181 - 46,202,463 (-)Ensembl
RefSeq Acc Id: XM_008011747   ⟹   XP_008009938
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11646,178,237 - 46,202,702 (-)NCBI
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,224 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008011750   ⟹   XP_008009941
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11646,178,237 - 46,202,694 (-)NCBI
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008011751   ⟹   XP_008009942
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11646,178,237 - 46,223,931 (-)NCBI
Vero_WHO_p1.0NW_02366607716,944,169 - 16,989,426 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008011753   ⟹   XP_008009944
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11646,178,237 - 46,189,782 (-)NCBI
Vero_WHO_p1.0NW_02366607716,944,169 - 16,958,714 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037993821   ⟹   XP_037849749
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,225 (-)NCBI
RefSeq Acc Id: XM_037993822   ⟹   XP_037849750
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,226 (-)NCBI
RefSeq Acc Id: XM_037993823   ⟹   XP_037849751
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,225 (-)NCBI
RefSeq Acc Id: XM_037993824   ⟹   XP_037849752
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,989,898 (-)NCBI
RefSeq Acc Id: XM_037993825   ⟹   XP_037849753
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 17,031,905 (-)NCBI
RefSeq Acc Id: XM_037993826   ⟹   XP_037849754
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,224 (-)NCBI
RefSeq Acc Id: XM_037993827   ⟹   XP_037849755
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,223 (-)NCBI
RefSeq Acc Id: XM_037993828   ⟹   XP_037849756
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,224 (-)NCBI
RefSeq Acc Id: XM_037993829   ⟹   XP_037849757
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,989,898 (-)NCBI
RefSeq Acc Id: XM_037993830   ⟹   XP_037849758
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,222 (-)NCBI
RefSeq Acc Id: XM_037993831   ⟹   XP_037849759
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,968,180 (-)NCBI
RefSeq Acc Id: XM_037993832   ⟹   XP_037849760
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607716,944,169 - 16,989,426 (-)NCBI
RefSeq Acc Id: XP_008009942   ⟸   XM_008011751
- Peptide Label: isoform X14
RefSeq Acc Id: XP_008009938   ⟸   XM_008011747
- Peptide Label: isoform X7
RefSeq Acc Id: XP_008009941   ⟸   XM_008011750
- Peptide Label: isoform X11
- UniProtKB: A0A0D9QXI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008009944   ⟸   XM_008011753
- Peptide Label: isoform X15
Ensembl Acc Id: ENSCSAP00000001072   ⟸   ENSCSAT00000002779
RefSeq Acc Id: XP_037849753   ⟸   XM_037993825
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037849757   ⟸   XM_037993829
- Peptide Label: isoform X9
RefSeq Acc Id: XP_037849752   ⟸   XM_037993824
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037849760   ⟸   XM_037993832
- Peptide Label: isoform X13
RefSeq Acc Id: XP_037849750   ⟸   XM_037993822
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037849751   ⟸   XM_037993823
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037849749   ⟸   XM_037993821
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037849756   ⟸   XM_037993828
- Peptide Label: isoform X8
RefSeq Acc Id: XP_037849754   ⟸   XM_037993826
- Peptide Label: isoform X5
RefSeq Acc Id: XP_037849755   ⟸   XM_037993827
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037849758   ⟸   XM_037993830
- Peptide Label: isoform X10
RefSeq Acc Id: XP_037849759   ⟸   XM_037993831
- Peptide Label: isoform X12


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004752 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002779.1 UniProtKB/TrEMBL
Gene3D-CATH Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  TMEM94 UniProtKB/TrEMBL
NCBI Gene TMEM94 ENTREZGENE
PANTHER PTHR13219 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 94 UniProtKB/TrEMBL
Superfamily-SCOP SSF81665 UniProtKB/TrEMBL
UniProt A0A0D9QXI3 ENTREZGENE, UniProtKB/TrEMBL