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Gene: RDH14 (retinol dehydrogenase 14) Chlorocebus sabaeus

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Symbol:

RDH14

Name:

retinol dehydrogenase 14

RGD ID:

18421245

Description:

ENCODES a protein that exhibits steroid dehydrogenase activity (ortholog); INVOLVED IN retinol metabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cytosol (inferred); endoplasmic reticulum (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

retinol dehydrogenase 14 (all-trans/9-cis/11-cis)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	89,128,850 - 89,134,879 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	89,128,828 - 89,135,033 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	23,096,213 - 23,102,239 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

retinol metabolic process (IEA,ISO)

Cellular Component

cytosol (IEA)

endoplasmic reticulum (IEA)

nucleoplasm (IEA)

Molecular Function

alcohol dehydrogenase (NADP+) activity (IEA)

all-trans-retinol dehydrogenase (NADP+) activity (IEA)

oxidoreductase activity (IEA)

protein binding (ISO)

steroid dehydrogenase activity (ISO)

References

Genomics

Comparative Map Data

RDH14
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	89,128,850 - 89,134,879 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	89,128,828 - 89,135,033 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	23,096,213 - 23,102,239 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

RDH14
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	18,554,723 - 18,560,653 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	18,554,723 - 18,560,679 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	18,735,989 - 18,741,919 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	18,599,473 - 18,605,381 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	18,657,624 - 18,663,520	NCBI
Celera	2	18,617,249 - 18,623,222 (-)	NCBI		Celera
Cytogenetic Map	2	p24.2	NCBI
HuRef	2	18,511,154 - 18,517,127 (-)	NCBI		HuRef
CHM1_1	2	18,665,393 - 18,671,366 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	18,586,834 - 18,592,767 (-)	NCBI		T2T-CHM13v2.0

Rdh14
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	10,440,752 - 10,445,562 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	10,440,772 - 10,445,562 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	10,390,748 - 10,395,562 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	10,390,772 - 10,395,562 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	10,397,586 - 10,402,368 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	10,416,788 - 10,421,569 (+)	NCBI		MGSCv36	mm8
Celera	12	10,767,241 - 10,772,010 (+)	NCBI		Celera
Cytogenetic Map	12	A1.1	NCBI
cM Map	12	5.29	NCBI

Rdh14
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	38,875,693 - 38,880,836 (+)	NCBI		GRCr8
mRatBN7.2	6	33,156,569 - 33,161,712 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	33,156,569 - 33,161,712 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	33,449,459 - 33,454,605 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	33,765,372 - 33,770,518 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	33,237,152 - 33,242,297 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	36,106,926 - 36,112,069 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	36,107,147 - 36,112,064 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	45,868,730 - 45,873,873 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	33,867,711 - 33,872,853 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	32,593,617 - 32,598,763 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

Rdh14
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	1,281,791 - 1,286,147 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	1,281,391 - 1,287,334 (-)	NCBI	ChiLan1.0	ChiLan1.0

RDH14
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	107,969,873 - 107,975,830 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	107,973,836 - 107,979,804 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	18,534,357 - 18,540,325 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	18,661,815 - 18,667,359 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

RDH14
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	13,843,278 - 13,848,498 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	13,795,101 - 13,800,302 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	13,986,784 - 13,991,984 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	13,986,775 - 13,992,058 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	13,843,170 - 13,848,363 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	13,848,691 - 13,853,892 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	13,882,462 - 13,887,659 (-)	NCBI		UU_Cfam_GSD_1.0

Rdh14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	58,292,202 - 58,297,536 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	12,542,144 - 12,546,977 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl

RDH14
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	119,453,995 - 119,458,778 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	119,453,986 - 119,458,787 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	127,542,600 - 127,547,399 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Rdh14
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	1,393,157 - 1,397,587 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RDH14
124 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007971381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000006017 ⟹ ENSCSAP00000004228

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	14	89,128,828 - 89,135,033 (+)	Ensembl

RefSeq Acc Id:

XM_007971381 ⟹ XP_007969572

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	14	89,128,850 - 89,134,879 (+)	NCBI
Vero_WHO_p1.0	NW_023666045	23,096,213 - 23,102,239 (-)	NCBI

Sequence:

show sequence

AGGGGCCGACCCGCCGCGCCTCAGAGTTCTCCGCGTACAGGTGTCTCCTGGGTTCCGGTAAGGC
GGCCGCTGCGGAACTCCCGTGGCAGGACCGGTGGGCCCTCGGGCCCGACGATGGCAGTGGCCAC
TGCGGCGGCAGTACTGGCCGCTCTGGGCGGGGCGCTGTGGCTGGCGGCCCGGCGGTTCGCGGGG
TCCGGGGTCCAGCGGCAGCGCGGAGGCGGGGACTCCGGCCTCATGCACGGGAAGACTGTGCTGA
TCACCGGGGCAAACAGCGGCCTGGGCCGCGCTACGGCCGCGGAGCTGGTGCGCCTGGGGGCGCG
TGTGATCATGGGCTGCCGGGACCGCGCGCGCGCCGAGGAGGCGGCGGGTCAGCTCCGTCGCGAG
CTCCGCCAGGCCGCGGAGTGCGGCCCAGAGCCCGGCGTCGGCGGGGCGGGCGAGCTCATAGTCC
GGGAGCTGGACCTCGCCTCGCTGCGCTCGGTGCGCGCCTTCTGCCAGGAAATGCTCCAGGAAGA
GCCCAGGCTGGATGTCTTGATCAATAATGCAGGGATCTTCCAGTGCCCTTACATGAAGACTGAA
GATGGGTTTGAGATGCAGTTCGGAGTGAACCATCTGGGGCACTTTCTACTCACCAATCTTCTCC
TTGGACTCCTCAAAAGTTCAGCTCCCAGCAGGATTGTGGTAGTTTCTTCCAAACTTTATAAATA
TGGAGACATCAACTTTGATGACTTGAACAGTGAACAAAGCTATAATAAAAGCTTTTGTTATAGC
CGGAGCAAACTGGCTAACATTCTTTTTACCAGGGAACTAGCCCGCCGCTTAGAAGGCACAAATG
TCACCGTCAATGTGTTGCATCCTGGTATTGTACGGACAAATCTGGGGAGGCACATACACATTCC
ACTGTTGGTCAGACCACTCTTCAATTTGGTGTCATGGGCTTTTTTCAAAACTCCAGTAGAAGGT
GCCCAGACTTCCATTTATTTGGCCTCTTCACCTGAAGTAGAAGGAGTGTCAGGAAGATACTTTG
GGGATTGTAAAGAGGAAGAATTATTGCCCAAAGCTATGGATGAATCTGTTGCAAGAAAACTCTG
GGATATCAGTGAAGTGATGGTTGGCCTGCTAAAATAGGAACAAGGAGTAAAAGAGCTGTTTATA
AAACTGCATATCAGTTATATCTGTGATCAGGAATGGTGTGGCTTGAGAACTTGTTACTTGAAGA
AAAAGAATTTTGATGTTGCAGTAGCACTGCTAAGAGGTACATGTGGATATTTTGGAGTTACTGA
AAAATTATTTTTGGGATAAGAGAATTTCAGCAAAGATGTTTTAAATATATATTGTAAGTATAAT
GAATAATAAGTACAATGAAAAATACAATTATATTGTAAAATTATAACTGGGCAAGCATGGATGA
CATATTAATATTTGTCACAATTAAGTGACTCAAAGTGCTATCGAGAGGTTTTTCAAGTATTTTT
GAGTTTCATGGCCAAAGTGTTAACTATTTTTACTACAATGTTTGGTGTTTGTGTGGAAATAATC
TGCCTGGTGTGTGCATACAAGTCTTACTTGGAATAAATTTACTGATACAAATTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_007969572	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000004228
	ENSCSAP00000004228.1

RefSeq Acc Id:	XP_007969572 ⟸ XM_007971381
- UniProtKB:	A0A0D9R6I9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000004228 ⟸ ENSCSAT00000006017

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000007969	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000006017.1	UniProtKB/TrEMBL
Gene3D-CATH	NAD(P)-binding Rossmann-like Domain	UniProtKB/TrEMBL
InterPro	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
	SDR_fam	UniProtKB/TrEMBL
KEGG Report	csab:103220741	UniProtKB/TrEMBL
NCBI Gene	RDH14	ENTREZGENE
PANTHER	DEHYDROGENASES, SHORT CHAIN	UniProtKB/TrEMBL
	PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED	UniProtKB/TrEMBL
Pfam	adh_short	UniProtKB/TrEMBL
PRINTS	GDHRDH	UniProtKB/TrEMBL
	SDRFAMILY	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51735	UniProtKB/TrEMBL
UniProt	A0A0D9R6I9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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