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Gene: TTC39A (tetratricopeptide repeat domain 39A) Chlorocebus sabaeus

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Symbol:

TTC39A

Name:

tetratricopeptide repeat domain 39A

RGD ID:

18419051

Description:

ASSOCIATED WITH Liver Neoplasms (ortholog); Wolff-Parkinson-White syndrome (ortholog); FOUND IN centrosome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tetratricopeptide repeat protein 39A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	81,608,949 - 81,668,469 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	81,625,002 - 81,668,728 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,614,293 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Liver Neoplasms (ISO)

Wolff-Parkinson-White syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

centrosome (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

TTC39A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	81,608,949 - 81,668,469 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	81,625,002 - 81,668,728 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,614,293 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TTC39A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	51,287,258 - 51,345,116 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	51,287,258 - 51,345,116 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	51,752,930 - 51,810,788 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	51,525,370 - 51,560,526 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	51,474,923 - 51,509,020	NCBI
Celera	1	50,039,459 - 50,097,314 (-)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	49,870,866 - 49,928,386 (-)	NCBI		HuRef
CHM1_1	1	51,870,379 - 51,928,229 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	51,167,163 - 51,225,015 (-)	NCBI		T2T-CHM13v2.0

Ttc39a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	109,251,344 - 109,301,942 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	109,263,820 - 109,301,942 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	109,394,147 - 109,444,749 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	109,406,623 - 109,444,745 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	109,079,705 - 109,117,350 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	108,905,029 - 108,942,677 (+)	NCBI		MGSCv36	mm8
Celera	4	107,747,325 - 107,784,942 (+)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	51.29	NCBI

Ttc39a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	129,379,560 - 129,441,779 (+)	NCBI		GRCr8
mRatBN7.2	5	124,165,102 - 124,204,740 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	124,151,760 - 124,204,973 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	126,781,574 - 126,820,877 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	128,504,632 - 128,543,934 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	128,555,920 - 128,595,222 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	129,024,505 - 129,083,226 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	129,043,675 - 129,082,442 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	5	129,249,506 - 129,288,805 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	133,083,934 - 133,123,236 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	130,761,328 - 130,800,627 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	130,766,551 - 130,805,365 (+)	NCBI
Celera	5	122,893,746 - 122,932,803 (+)	NCBI		Celera
Cytogenetic Map	5	q35	NCBI

Ttc39a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	7,709,362 - 7,736,484 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	7,709,669 - 7,736,484 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTC39A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	175,522,000 - 175,579,906 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	174,662,551 - 174,720,458 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	50,531,607 - 50,589,515 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	52,030,470 - 52,087,870 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	52,030,470 - 52,074,328 (-)	Ensembl	panpan1.1		panPan2

TTC39A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	9,931,352 - 9,954,508 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	9,904,278 - 9,949,928 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	10,064,809 - 10,105,848 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	10,038,325 - 10,079,415 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	10,029,265 - 10,077,513 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	9,850,027 - 9,891,057 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	9,939,154 - 9,980,189 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	9,955,597 - 9,996,655 (+)	NCBI		UU_Cfam_GSD_1.0

Ttc39a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	65,867,976 - 65,918,019 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	9,510,602 - 9,549,364 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	9,510,630 - 9,549,364 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC39A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	160,806,629 - 160,854,489 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	160,806,634 - 160,854,498 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	148,613,656 - 148,634,120 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Ttc39a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624859	1,769,767 - 1,804,025 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624859	1,760,693 - 1,804,025 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TTC39A
923 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
75	36	20	36	36	59	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007978773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007978774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007978775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007978776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007978777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007978778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007978779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000017268 ⟹ ENSCSAP00000016750

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	81,625,002 - 81,668,728 (+)	Ensembl

RefSeq Acc Id:

XM_007978774 ⟹ XP_007976965

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	81,623,599 - 81,668,415 (+)	NCBI
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,614,286 (-)	NCBI

Sequence:

show sequence

TTCAGTTTGTTTAAATAATATAAACTTCAAGGCTCAGTTCTGTCACCACCTCTTCCAGGAAGCT
CCCCAGGCTCTCCCCTTGTCTGAATTCTTTATAGTTGCTGGTGGATGTCATCATAGCTTGCTTC
TAGTAGTTAATTATCTTTTTCGTGCCTGTATATGAGACTCCCAGAGATGGGATGATTCTTGCAA
ATGAGCACCTGGCCGCTGCTCACAAATGGGCAGGATGGGACTTCACTGCCTTTCCAGGCAGCCT
GCTTAGATTTAAGCAGCTACCACCAAGCCCAAACTGCCTGGCTCCCCTGGGATCTGGTGCAAGT
CCTGTCCCCACTGTGGTTGCTTCTGCAGGTTGTCCCCTTCTGCTTCTTCTTCTGGTGTCCTGGA
GGTCATGGTTGCTCCAGGGGAGCTACAGTCCTTCCTTACTTCTGTCCCTTCCTTTGTGAAGGGA
CAGCTCTAATGGCAGCCACATGCTGTGATGAGTCATGGTTAAGAGCAGCATCTGGGGCCAGGAG
GTGGTGGCTGGTTAACTCTTCATGGGCCAGTGGCTCTCTCTGCCAGAAGATCAGGTCAGGTGGA
GACACTCGCCTCAGGGCTCGGTGCACAGTGGACATTTGGGGAGTGTTGTGGGTGACCCCCACAC
AAGCGCTGGGAATGCCGGGGAGAGGGGGCCAAGAGGGGAAGTGGCCAGAGTGTTGGCTTTGGAT
TCAGGAGGGATGGATTCCAGTCCTAGCTTGCCACTTACTAGGACTCCTGAGAGCAGCCTCCACG
AGGCCCTGGACCAGTGCATGACCGCCCTGGACCTTTTCCTCACCAACCAGTTCTCAGAAGCACT
CAGCTACCTCAAACCCAGAACCAAGGAAAGCATGTACCACTCACTGACGTATGCCACCATCCTG
GAGATGCAGGCCATGATGACCTTTGACCCTCAGGACATCCTGCTCGCCGGCAACATGATGAAGG
AGGCACAGATGCTGTGTCAGAGGCACCGGAGGAAGTCTTCTGTAACAGATTCCTTCAGCAGCCT
GGTGAACCGCCCCACACTGGGCCAATTCACTGAAGAGGAAATCCACGCTGAGGTCTGCTATGCA
GAGTGCCTGCTGCAGCGAGCAGCCCTGACCTTCCTGCAGGACGAGAACATGGTGAGCTTCATCA
AAGGTGGCATCAAAGTTCGAAACAGCTACCAGACTTACAAGGAGCTGGACAGCCTTGTCCAGTC
CTCACAATACTGCAAGGGTGAGAACCACCCGCACTTTGAAGGAGGAGTGAAGCTCGGTGTGGGG
GCCTTCAACCTGACATTGTCCATGCTTCCTACTAGGATCCTGAGGCTGCTGGAGTTCGTGGGCT
TTTCAGGAAACAAGGACTATGGGCTGCTGCAGCTGGAGGAGGGCGCGTCAGGACACAGCTTCCG
CGCTGTGCTGTGTGTCATGCTCCTGCTGTGCTACCACACCTTCCTCACCTTCGTGCTCGGTACT
GGGAATGTCAACATCGAGGAGGCCGAGAAGCTCTTGAAGCCCTACCTGAACCGGTACCCTAAGG
GCGCCATCTTCCTGTTCTTCGCAGGGCGGATTGAAGTCATTAAAGGCAACATTGATGCAGCCAT
CCGGCGTTTCGAGGAGTGCTGTGAGGCCCAGCAGCACTGGAAGCAGTTCCACCACATGTGCTAC
TGGGAGCTGATGTGGTGCTTCACCTACAAGGGCCAGTGGAAGATGTCCTACTTCTACGCCGACC
TGCTCAGCAAGGAGAACTGCTGGTCCAAGGCCACCTACATTTACATGAAGGCCGCCTACCTCAG
CATGTTTGGTGAGGAGGAGTACAAGCCGTTCGGGGACAACGAAGTGGAATTATTTAGAGCTGTG
CCAGGCCTGAAGCTCAAGATTGCTGGGAAATCTCTACCCACAGAGAAGTTTGCCATCCGGAAGT
CCCGGCGCTACCTCTCCTCCAACCCTATCTCGCTGCCAGTGCCTGCTCTGGAAATGATGTACAT
CTGGAACGGCTACGCTGTGATTGGGAAGCAGCCGACACTCACAGATGGGATGCTTGAGATCATC
ACCAAGGCGGAAGAGATGCTGGAGAAAGGCCCAGAGAACGAGTACTCAGTGGATGACGAGTGCT
TGGTGAAACTGTTGAAAGGCCTGTGTCTGAAATACCTGGGCCGTGTCCGGGAGGCCGAGGAGAA
TTTTAGGAGCATCTCTGCCAATGAAAAGAAGATTAAATATGACCACTACTTGATCCCAAACGCC
CTGCTGGAGCTGGCCCTGCTGTTTATGGAGCAAGGCAGAAATGAAGAGGCTATCAAACTCTTGG
AATCTGCCAAGCAAAACTACAAGAATTACTCCATGGAGTCAAGGACACACTTTCGAATCCAAGC
AGCCACACTCCAAGCCAAGTCTTCCCTAGAGAACAGCAGCAGATCCATGGTCTCATCAGTGTCC
TTGTAGCTTTGTGCAGCAGTTCTGGGCTGGAAGACAAACAGACAGCTGGACAGAGCTCCTGGAA
ACATTTCAAAAGATCCCCTCCCCCTGCCCTGCCCTGCCTTTGGGGTCCACCGGCGCTCCGGTTG
GATGGCACGACATGGGTATCCGTGCAGAAGCCAAGCTGGCATTTTCACCAGTGTGGCCAAGGGC
CTTTGCCAAGGGCAGAGCAGGTGGAGCCCTCTGCCTGCCTATCACACATACGGGTACTTGCTTT
TCACTGTGATGTTTAAGAGAATGTATGAACAGTTTACATTTTCCTTAGAAATACATTGATGGGA
TCACAGTTGGCTTTAAAAACCAACAACCACCAACCACCTGTAAGTCTTTGTCTTCACCTATTAT
CATCTGGAGGTAAATCTCTTTATATGATGATGCCAAAGGGCAAATTGCTTTTCAAATTCAGCAA
GTTCTCAGCTTGTGTGACTGAAGGGCCTTCAGAGGACCTGAGGAGTGCCTGGGAGAGGCTGAGC
CTCAGGCTTCAATGCTTCTGGGGTTGGGCACGAGGATGCACACAGACATCCACTACTTTACTAC
TCACACTTCATTTCACTCCTTTTGTAAATTTCCAATTTAAAAATCAAGCACATCTTTTTAGTGA
GATAAAATCTGAGCTCTTGTGTAGAAAAATCCATCTCCACCAGTAGGAAATGCCACAGCTTGAT
GGAAGAGCTGTGTGGCCCTTTCTGTGCCAAAGCCAGGGATTTTGGGGGGCAGGAGGAGGTTCTC
AGAATCCAGTCTGTGTCTTTGCTGTATGCCAACCTGAAACCACTGGGAATAATTTATGAAAGAT
AAAAATCTTCTGTACTTCA

hide sequence

RefSeq Acc Id:

XM_007978777 ⟹ XP_007976968

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	81,624,896 - 81,668,415 (+)	NCBI
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,613,428 (-)	NCBI

Sequence:

show sequence

GCGCCCCTCCCCGGCCGCCGCGTCCGCGACCGCACAGCGCCCGGCTCGGGGTTCCGGCGGCAGC
ACCTGGGCCGCGGCTGGCGTCCGGCTGGGGCAGCGCAGCCCGCGCCCCTCGGCGATGACCTCGG
CTGGCGCCCCGGGAGCCCTGCCCGCGGGGACTCCTGAGAGCAGCCTCCACGAGGCCCTGGACCA
GTGCATGACCGCCCTGGACCTTTTCCTCACCAACCAGTTCTCAGAAGCACTCAGCTACCTCAAA
CCCAGAACCAAGGAAAGCATGTACCACTCACTGACGTATGCCACCATCCTGGAGATGCAGGCCA
TGATGACCTTTGACCCTCAGGACATCCTGCTCGCCGGCAACATGATGAAGGAGGCACAGATGCT
GTGTCAGAGGCACCGGAGGAAGTCTTCTGTAACAGATTCCTTCAGCAGCCTGGTGAACCGCCCC
ACACTGGGCCAATTCACTGAAGAGGAAATCCACGCTGAGGTCTGCTATGCAGAGTGCCTGCTGC
AGCGAGCAGCCCTGACCTTCCTGCAGGACGAGAACATGGTGAGCTTCATCAAAGGTGGCATCAA
AGTTCGAAACAGCTACCAGACTTACAAGGAGCTGGACAGCCTTGTCCAGTCCTCACAATACTGC
AAGGGTGAGAACCACCCGCACTTTGAAGGAGGAGTGAAGCTCGGTGTGGGGGCCTTCAACCTGA
CATTGTCCATGCTTCCTACTAGGATCCTGAGGCTGCTGGAGTTCGTGGGCTTTTCAGGAAACAA
GGACTATGGGCTGCTGCAGCTGGAGGAGGGCGCGTCAGGACACAGCTTCCGCGCTGTGCTGTGT
GTCATGCTCCTGCTGTGCTACCACACCTTCCTCACCTTCGTGCTCGGTACTGGGAATGTCAACA
TCGAGGAGGCCGAGAAGCTCTTGAAGCCCTACCTGAACCGGTACCCTAAGGGCGCCATCTTCCT
GTTCTTCGCAGGGCGGATTGAAGTCATTAAAGGCAACATTGATGCAGCCATCCGGCGTTTCGAG
GAGTGCTGTGAGGCCCAGCAGCACTGGAAGCAGTTCCACCACATGTGCTACTGGGAGCTGATGT
GGTGCTTCACCTACAAGGGCCAGTGGAAGATGTCCTACTTCTACGCCGACCTGCTCAGCAAGGA
GAACTGCTGGTCCAAGGCCACCTACATTTACATGAAGGCCGCCTACCTCAGCATGTTTGGTGAG
GAGGAGTACAAGCCGTTCGGGGACAACGAAGTGGAATTATTTAGAGCTGTGCCAGGCCTGAAGC
TCAAGATTGCTGGGAAATCTCTACCCACAGAGAAGTTTGCCATCCGGAAGTCCCGGCGCTACCT
CTCCTCCAACCCTATCTCGCTGCCAGTGCCTGCTCTGGAAATGATGTACATCTGGAACGGCTAC
GCTGTGATTGGGAAGCAGCCGACACTCACAGATGGGATGCTTGAGATCATCACCAAGGCGGAAG
AGATGCTGGAGAAAGGCCCAGAGAACGAGTACTCAGTGGATGACGAGTGCTTGGTGAAACTGTT
GAAAGGCCTGTGTCTGAAATACCTGGGCCGTGTCCGGGAGGCCGAGGAGAATTTTAGGAGCATC
TCTGCCAATGAAAAGAAGATTAAATATGACCACTACTTGATCCCAAACGCCCTGCTGGAGCTGG
CCCTGCTGTTTATGGAGCAAGGCAGAAATGAAGAGGCTATCAAACTCTTGGAATCTGCCAAGCA
AAACTACAAGAATTACTCCATGGAGTCAAGGACACACTTTCGAATCCAAGCAGCCACACTCCAA
GCCAAGTCTTCCCTAGAGAACAGCAGCAGATCCATGGTCTCATCAGTGTCCTTGTAGCTTTGTG
CAGCAGTTCTGGGCTGGAAGACAAACAGACAGCTGGACAGAGCTCCTGGAAACATTTCAAAAGA
TCCCCTCCCCCTGCCCTGCCCTGCCTTTGGGGTCCACCGGCGCTCCGGTTGGATGGCACGACAT
GGGTATCCGTGCAGAAGCCAAGCTGGCATTTTCACCAGTGTGGCCAAGGGCCTTTGCCAAGGGC
AGAGCAGGTGGAGCCCTCTGCCTGCCTATCACACATACGGGTACTTGCTTTTCACTGTGATGTT
TAAGAGAATGTATGAACAGTTTACATTTTCCTTAGAAATACATTGATGGGATCACAGTTGGCTT
TAAAAACCAACAACCACCAACCACCTGTAAGTCTTTGTCTTCACCTATTATCATCTGGAGGTAA
ATCTCTTTATATGATGATGCCAAAGGGCAAATTGCTTTTCAAATTCAGCAAGTTCTCAGCTTGT
GTGACTGAAGGGCCTTCAGAGGACCTGAGGAGTGCCTGGGAGAGGCTGAGCCTCAGGCTTCAAT
GCTTCTGGGGTTGGGCACGAGGATGCACACAGACATCCACTACTTTACTACTCACACTTCATTT
CACTCCTTTTGTAAATTTCCAATTTAAAAATCAAGCACATCTTTTTAGTGAGATAAAATCTGAG
CTCTTGTGTAGAAAAATCCATCTCCACCAGTAGGAAATGCCACAGCTTGATGGAAGAGCTGTGT
GGCCCTTTCTGTGCCAAAGCCAGGGATTTTGGGGGGCAGGAGGAGGTTCTCAGAATCCAGTCTG
TGTCTTTGCTGTATGCCAACCTGAAACCACTGGGAATAATTTATGAAAGATAAAAATCTTCTGT
ACTTCA

hide sequence

RefSeq Acc Id:

XM_007978779 ⟹ XP_007976970

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	81,624,360 - 81,668,415 (+)	NCBI
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,613,653 (-)	NCBI

Sequence:

show sequence

GAATCAAATGAACCGCATGCCTCAGTTTTCCCATCTATAAAATAGCAATTATGGGATCATTTGA
GAAGGCAGTGTGAACTGCCAGCTAGCGGTGACTGCTAAACCGTTTTTCCCGCCTTCTGGTCTCC
TGCAGTCACTCAGTGGGCAAGATGGTGGGATTAAAATCCAGGCCTGGCTCTGGGGGATGTCTTT
GTCTGCACGAATGCCCTAATTAATGCGGGAGCATGGTGACGGCTCAGGACTCCTGAGAGCAGCC
TCCACGAGGCCCTGGACCAGTGCATGACCGCCCTGGACCTTTTCCTCACCAACCAGTTCTCAGA
AGCACTCAGCTACCTCAAACCCAGAACCAAGGAAAGCATGTACCACTCACTGACGTATGCCACC
ATCCTGGAGATGCAGGCCATGATGACCTTTGACCCTCAGGACATCCTGCTCGCCGGCAACATGA
TGAAGGAGGCACAGATGCTGTGTCAGAGGCACCGGAGGAAGTCTTCTGTAACAGATTCCTTCAG
CAGCCTGGTGAACCGCCCCACACTGGGCCAATTCACTGAAGAGGAAATCCACGCTGAGGTCTGC
TATGCAGAGTGCCTGCTGCAGCGAGCAGCCCTGACCTTCCTGCAGGACGAGAACATGGTGAGCT
TCATCAAAGGTGGCATCAAAGTTCGAAACAGCTACCAGACTTACAAGGAGCTGGACAGCCTTGT
CCAGTCCTCACAATACTGCAAGGGTGAGAACCACCCGCACTTTGAAGGAGGAGTGAAGCTCGGT
GTGGGGGCCTTCAACCTGACATTGTCCATGCTTCCTACTAGGATCCTGAGGCTGCTGGAGTTCG
TGGGCTTTTCAGGAAACAAGGACTATGGGCTGCTGCAGCTGGAGGAGGGCGCGTCAGGACACAG
CTTCCGCGCTGTGCTGTGTGTCATGCTCCTGCTGTGCTACCACACCTTCCTCACCTTCGTGCTC
GGTACTGGGAATGTCAACATCGAGGAGGCCGAGAAGCTCTTGAAGCCCTACCTGAACCGGTACC
CTAAGGGCGCCATCTTCCTGTTCTTCGCAGGGCGGATTGAAGTCATTAAAGGCAACATTGATGC
AGCCATCCGGCGTTTCGAGGAGTGCTGTGAGGCCCAGCAGCACTGGAAGCAGTTCCACCACATG
TGCTACTGGGAGCTGATGTGGTGCTTCACCTACAAGGGCCAGTGGAAGATGTCCTACTTCTACG
CCGACCTGCTCAGCAAGGAGAACTGCTGGTCCAAGGCCACCTACATTTACATGAAGGCCGCCTA
CCTCAGCATGTTTGGTGAGGAGGAGTACAAGCCGTTCGGGGACAACGAAGTGGAATTATTTAGA
GCTGTGCCAGGCCTGAAGCTCAAGATTGCTGGGAAATCTCTACCCACAGAGAAGTTTGCCATCC
GGAAGTCCCGGCGCTACCTCTCCTCCAACCCTATCTCGCTGCCAGTGCCTGCTCTGGAAATGAT
GTACATCTGGAACGGCTACGCTGTGATTGGGAAGCAGCCGACACTCACAGATGGGATGCTTGAG
ATCATCACCAAGGCGGAAGAGATGCTGGAGAAAGGCCCAGAGAACGAGTACTCAGTGGATGACG
AGTGCTTGGTGAAACTGTTGAAAGGCCTGTGTCTGAAATACCTGGGCCGTGTCCGGGAGGCCGA
GGAGAATTTTAGGAGCATCTCTGCCAATGAAAAGAAGATTAAATATGACCACTACTTGATCCCA
AACGCCCTGCTGGAGCTGGCCCTGCTGTTTATGGAGCAAGGCAGAAATGAAGAGGCTATCAAAC
TCTTGGAATCTGCCAAGCAAAACTACAAGAATTACTCCATGGAGTCAAGGACACACTTTCGAAT
CCAAGCAGCCACACTCCAAGCCAAGTCTTCCCTAGAGAACAGCAGCAGATCCATGGTCTCATCA
GTGTCCTTGTAGCTTTGTGCAGCAGTTCTGGGCTGGAAGACAAACAGACAGCTGGACAGAGCTC
CTGGAAACATTTCAAAAGATCCCCTCCCCCTGCCCTGCCCTGCCTTTGGGGTCCACCGGCGCTC
CGGTTGGATGGCACGACATGGGTATCCGTGCAGAAGCCAAGCTGGCATTTTCACCAGTGTGGCC
AAGGGCCTTTGCCAAGGGCAGAGCAGGTGGAGCCCTCTGCCTGCCTATCACACATACGGGTACT
TGCTTTTCACTGTGATGTTTAAGAGAATGTATGAACAGTTTACATTTTCCTTAGAAATACATTG
ATGGGATCACAGTTGGCTTTAAAAACCAACAACCACCAACCACCTGTAAGTCTTTGTCTTCACC
TATTATCATCTGGAGGTAAATCTCTTTATATGATGATGCCAAAGGGCAAATTGCTTTTCAAATT
CAGCAAGTTCTCAGCTTGTGTGACTGAAGGGCCTTCAGAGGACCTGAGGAGTGCCTGGGAGAGG
CTGAGCCTCAGGCTTCAATGCTTCTGGGGTTGGGCACGAGGATGCACACAGACATCCACTACTT
TACTACTCACACTTCATTTCACTCCTTTTGTAAATTTCCAATTTAAAAATCAAGCACATCTTTT
TAGTGAGATAAAATCTGAGCTCTTGTGTAGAAAAATCCATCTCCACCAGTAGGAAATGCCACAG
CTTGATGGAAGAGCTGTGTGGCCCTTTCTGTGCCAAAGCCAGGGATTTTGGGGGGCAGGAGGAG
GTTCTCAGAATCCAGTCTGTGTCTTTGCTGTATGCCAACCTGAAACCACTGGGAATAATTTATG
AAAGATAAAAATCTTCTGTACTTCA

hide sequence

RefSeq Acc Id:

XM_037999809 ⟹ XP_037855737

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,614,290 (-)	NCBI

RefSeq Acc Id:

XM_037999810 ⟹ XP_037855738

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,614,293 (-)	NCBI

RefSeq Acc Id:

XM_037999811 ⟹ XP_037855739

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,613,432 (-)	NCBI

RefSeq Acc Id:

XM_037999812 ⟹ XP_037855740

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,613,432 (-)	NCBI

RefSeq Acc Id:

XM_037999813 ⟹ XP_037855741

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,613,655 (-)	NCBI

RefSeq Acc Id:

XM_037999814 ⟹ XP_037855742

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,613,427 (-)	NCBI

RefSeq Acc Id:

XM_037999815 ⟹ XP_037855743

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,588,449 (-)	NCBI

RefSeq Acc Id:

XM_037999816 ⟹ XP_037855744

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,588,449 (-)	NCBI

RefSeq Acc Id:

XM_037999817 ⟹ XP_037855745

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666033	35,569,671 - 35,586,789 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007976965	(Get FASTA)	NCBI Sequence Viewer
	XP_007976968	(Get FASTA)	NCBI Sequence Viewer
	XP_007976970	(Get FASTA)	NCBI Sequence Viewer
	XP_037855737	(Get FASTA)	NCBI Sequence Viewer
	XP_037855738	(Get FASTA)	NCBI Sequence Viewer
	XP_037855739	(Get FASTA)	NCBI Sequence Viewer
	XP_037855740	(Get FASTA)	NCBI Sequence Viewer
	XP_037855741	(Get FASTA)	NCBI Sequence Viewer
	XP_037855742	(Get FASTA)	NCBI Sequence Viewer
	XP_037855743	(Get FASTA)	NCBI Sequence Viewer
	XP_037855744	(Get FASTA)	NCBI Sequence Viewer
	XP_037855745	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016750
	ENSCSAP00000016750.1

RefSeq Acc Id:	XP_007976965 ⟸ XM_007978774
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_007976970 ⟸ XM_007978779
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_007976968 ⟸ XM_007978777
- Peptide Label:	isoform X6
- UniProtKB:	A0A0D9S7B1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000016750 ⟸ ENSCSAT00000017268

RefSeq Acc Id:	XP_037855738 ⟸ XM_037999810
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037855737 ⟸ XM_037999809
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_037855741 ⟸ XM_037999813
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_037855739 ⟸ XM_037999811
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_037855740 ⟸ XM_037999812
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_037855742 ⟸ XM_037999814
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_037855744 ⟸ XM_037999816
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_037855743 ⟸ XM_037999815
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_037855745 ⟸ XM_037999817
- Peptide Label:	isoform X9

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001265	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017268.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	Iml2/TPR_39	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
NCBI Gene	TTC39A	ENTREZGENE
PANTHER	PTHR31859	UniProtKB/TrEMBL
	PTHR31859:SF3	UniProtKB/TrEMBL
Pfam	DUF3808	UniProtKB/TrEMBL
	TPR_6	UniProtKB/TrEMBL
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	HCP-like	UniProtKB/TrEMBL
UniProt	A0A0D9S7B1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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