| Gene: LRRC53 (leucine rich repeat containing 53) Chlorocebus sabaeus |
|
Analyze |
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| Symbol: |
LRRC53 |
| Name: |
leucine rich repeat containing 53 |
| RGD ID: |
18413729 |
| Description: |
ASSOCIATED WITH Cardiac Conduction Disease with or without Dilated Cardiomyopathy (ortholog); genetic disease (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
leucine-rich repeat-containing protein 53; LOC103224611 |
| RGD Orthologs |
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| Alliance Orthologs |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChlSab1.1 - Green Monkey 1.1 Assembly |
| Position: |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 20 | 58,640,427 - 58,693,003 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 20 | 58,679,269 - 58,692,748 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666033 | 58,755,268 - 58,806,414 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
LRRC53
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 20 | 58,640,427 - 58,693,003 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 20 | 58,679,269 - 58,692,748 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666033 | 58,755,268 - 58,806,414 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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LRRC53
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 1 | 74,469,376 - 74,537,079 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 74,469,376 - 74,512,611 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 74,935,060 - 74,978,295 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 1 | p31.1 | NCBI | | | | | CHM1_1 | 1 | 75,050,141 - 75,121,397 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 74,310,757 - 74,378,470 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Gm18589
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 3 | 154,543,474 - 154,559,331 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm38 | 3 | 154,837,837 - 154,853,694 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | MGSCv37 | 3 | 154,504,973 - 154,505,551 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | Celera | 3 | 161,300,209 - 161,300,787 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | H4 | NCBI | | | | | cM Map | 3 | 79.32 | NCBI | | | | |
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Lrrc53
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 246,441,139 - 246,467,281 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 243,781,445 - 243,807,037 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 243,769,297 - 243,803,164 (+) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 2 | 261,058,919 - 261,139,463 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 279,721,709 - 279,818,727 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 2 | 235,649,404 - 235,729,067 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q45 | NCBI | | | | |
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Lrrc53
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955423 | 18,141,159 - 18,204,497 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LRRC53
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 152,366,488 - 152,409,857 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 151,526,925 - 151,569,397 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 73,698,516 - 73,741,908 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 Ensembl | 1 | 75,674,245 - 75,687,706 (-) | Ensembl | panpan1.1 | | panPan2 | |
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LRRC53
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
|---|
Dog10K_Boxer_Tasha | 6 | 74,552,246 - 74,566,681 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 6 | 72,480,811 - 72,496,551 (+) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 6 | 71,974,634 - 71,990,365 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 6 | 71,921,295 - 71,936,976 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 6 | 72,416,208 - 72,431,961 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Lrrc53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405058 | 86,260,241 - 86,280,518 (-) | NCBI | | HiC_Itri_2 | | |
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Lrrc53
(Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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endocrine system |
hemolymphoid system |
nervous system |
| High |
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| Medium |
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| Low |
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9
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19
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| Below cutoff |
9
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8
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29
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Sequence
| RefSeq Acc Id: |
ENSCSAT00000017150 ⟹ ENSCSAP00000016635 |
| Type: |
CODING |
| Position: |
| Green Monkey Assembly | Chr | Position (strand) | Source |
|---|
ChlSab1.1 Ensembl | 20 | 58,679,269 - 58,692,748 (+) | Ensembl |
|
| RefSeq Acc Id: |
XM_007978290 ⟹ XP_007976481 |
| Type: |
CODING |
| Position: |
| Green Monkey Assembly | Chr | Position (strand) | Source |
|---|
ChlSab1.1 | 20 | 58,678,301 - 58,693,003 (+) | NCBI | Vero_WHO_p1.0 | NW_023666033 | 58,755,268 - 58,806,414 (-) | NCBI |
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| Sequence: |
GTTGAATAAATAATAGAATTAATCATTTTATGTCTTTTTCAACATTTTATTTTGTTCTCAAACT
ATCTTATAATATAGGTAGAGGGTTTTATTATAATTTGCTCCTTTTTTTTTTAATCAACCAGTGA
AGGCATTATAAATGAATTGTCTTTTTTGAACATAAAATTCAAGTGATGTTAAATATTTCTCTGG
GGAGTTGAAAAAGCTTAAAAATAATGGTAAAATTTAACATTTAGTAAACACTTAGAGTACCCAT
TTAACTCATATAATACTCTGTACTGTAGGAATTTATTATTATTTCTATTTTACGCAAAAAACAA
AGAGACTTTTTTTCTAAGATAATATAGTCACTACAAACAGAGCTGAATTCAAAGCTAAGTAGAG
CTTGTGAGTTTAATCTTGACTTCATACTCACTCCCTAGGTGTGGCATTTAAATCTATAAGGAGT
AAGAATTTAGTTGTAATCATGTAAAACTCAGTGCCTGAGATGAGCTTTGCATACTAGAAGAAAC
ACTGGATTGAAAGTTAAAAGACTTGGTTAAAAAACTACCCGCTATGTGATTTACGATGGTTTAC
TAACAATCCTGAGCTGTTTCTTTAGTCTCTAATTGGGCTGCAGAATTAAGAGAACTAAGTAAGA
TAATGTTTGGTGAAAGCACTACAAACTATATGTTGTTTTGCAAAGTAACTTAATTTTTTCAAAA
TACTAATAAATATGCCGTGGATGTGAGCTCTCTGAATTTATAGTCAAATGCGTTAACATTTTGG
TTTAAATTCTATGCAAATTAAGGAATGTAGTTATTTACCTGGCATCTTAAGAGAACACCAAGAT
GCTTATTGAACAGTAGAAATTACCAAAATGCCTCATGAGCTGTATGTACTAAAATAATGCACAG
TAAATGCCAACATTATGATATACATTGCCGTCTACTTTCCTTTCAGGTGGATGGCTGGTACTCT
TCGCCATCATGTTGCAGTTGGTGGCAGCTTGCCCTGAGTCATGTGTGGTGTGCACCAAAGATGT
AACCCTCTGTCACCAGCTAACCTATATAGTAGCAGCCCCTATGACCACGAGGGTTTTAATCATC
ACTGATGGATATCTGTCCTCTATTGAAAGCACCAACCTGTCTCTCTTGTTTAATCTTGCCCTGC
TCTCTCTGAGCAGAAATGGTATCAAGGATGTTCAGGAAGATGCCCTAGATGGCCTTACGATGTT
GCGGACTTTGTTGCTGGAGCACAACCAAATATCCAGCTCTTCGCTCACTGATCACACCTTCAGC
AAGCTTCACAGCCTGCAGGTGCTGGTGCTGAGCAATAATGCTCTCCGCACCCTACGAGGGTCTT
GGTTCCGAAACACAAGGGGCCTGACCCGGCTCCAGCTGGATGGGAATCAGATCACTAATCTCAC
AGACAGTTCTTTTGGAGGCACGAATCTCCACAGTCTCAGGCATCTGGATTTATCCAACAATTTT
ATTTCCTACATTGGGAAAGATGCCTTCCGGCCCCTGCCTCAACTACAGGAAGTGGACCTTTCGC
GAAATAGGTTAGCCCACATGCCGGATGTTTTTACTCCACTGAAGCAGTTAATCCATCTGAGCTT
AGATAAGAACCAGTGGAGCTGCACTTGTGATCTCCATCCCCTTGCTCGGTTTTTAAGAAACTAC
ATTAAGTCTTCTGCTCACACGCTCAGGAATGCCAAGGACCTAAATTGTCAGCCATCTACCGCAG
CTGTGGCAGCTGCACAGAGTGTGCTGAGGCTGTCTGAGACCAACTGTGTTTCCAAAGCTCCCAA
CTTCACTCTGGTTCTAAAGGACAGAAGTCCCCTCCTCCCGGGACAAGATGTGGCCCTGCTGACT
GTCCTTGGCTTTGCAGGAGCTGTTGGTCTCACTTGCCTAGGTTTAGTTGTATTTAACTGGAAAC
TCCAACAAGGCAAAGCAAATGAACATACATCAGAAAACCTTTGTTGCAGAACCTTCAACGAACC
CCTGTGTGCTCACGGGGCAAGAAATTACCACACTAAGGGATACTGTAACTGCCACTTAACCCAG
GAAAACGAGATAAAGATCATGTCCATTGTGGGGTCCAGAAAGGAAATGCCACTTTTACAGGAAA
ATAGTCATCAAGCAACATCGGCCTCTGAGTCCACAACCCTTGATGGATCATTTAGAAACCTGAA
AAAGAAAGACCATGGGGTAGGCAGCACTTTATTTTGCAAGGATGGTAGATTGCTGCATTCAAGG
TGTTCACAGTCTCCTGGAAATATGACAGCTTTTAATGAAGCAGGCTTACTTACAACATGTAATT
CAAGGAAAGTTCAAAAGCTAAGGAATCTTGAGTCTGAAGAAGTCCTGCCTCAAACTCTGCCACA
CCATATAATAAGAACAGAAGATATCAGCAGTGACACATTTAGAAGAAGATATGCAATACCCGCT
TCAGCCTTGGCAGGAGAAAGTCTTGAGAAGCATTTAACAAATGAATCATGGCAGCCTCCAACAG
AAAAAGAAGACAATGGCTTACAACCTCATAGGCAGAGACATTTTATTGCAAGCTCATCATCCAA
GCCTTGTGAGCCTGAGGAACACTATGTACAAAAGATCGTACGAAAACATAGATCAAAATATTAT
GATCCTTGTGGACTGTTAAAACAGAGCAGACCTAGACATTTTCAGCCAAACAATTCTCTTATCT
GTAAATATGTGCCCTGTGATCAATTTGAAGATTACATGAAAGAAAAGCCAAATCGTAGACAACA
CTCAAAGCCTGAGAAAGAGCAAGTCCAAATTAACAGCGCAATAGAAAAATTTCTTATGAGTGAG
GACAACATAGATTTATCAGGATTATCAACAAAAATCAAGAAAGCATATTCCCCAAAGAGGGTTA
GTGTCCATGATCCTGATTTAGTAGAAATAAATAGGTCAATAATGTCACCCAAAACATCAACCCC
TTGGAAACAACAGAAAAATCAAAGTAACCAGCTGACTAAGTTGGGTGTCAAAAACTGTAGCAAC
CCTGGGGAGAGAAACAAAGGAGAAAAATGGTTTCCTAATTCACGGGTTCTGAGAAGGAAGAGAA
CCCTTCAGTCTGACCTCAAAGGGAAGATTAAAGGACGAAACTTAAAGATAAAATTAAATTTACA
TCCTTTTAGAAAAGTCAGAGTCCATCCAGAAAAATCCTTGTCAGGTCTCCCAAAGCAATGCAAG
CAAGTATTGTTGCCTCCTAAGAAATTATCCAAAACTTCTGAGACAAAAGCCAAAATAAATACTG
TGTCTTCTGCAGATTTTCTTCAACAGTCAGAGAGTAGCAACTATGTTAGACTCACTTCAAAGCG
GCTGCCTCTGAAACATGCCTCAAAGCAGACCCCATATTACCAACGAAACACTAAACGTGCCCCG
CTGCTCAGTGCTAACAACTTGTCTGTAGTCAACCAGAGCTCTATAGAAAGCAACTGTTATTCAG
CTGGCCACATTCCTGATGGAAACACATCAAAATTGCCTCAGCCTACACCCACTGATGCTGAGCA
CAGGCACTCACATTCTCAATTCTCAACTGAACAAATGGAAGGTGCAACTCAGCTTGAATCAAAA
GTGCTTAGTTATTTACCAACTACTTGGGAAAATACAGGAAGTGATGTTTTACCATTCCAGCATT
CCACGGGGGCTACTGACCAACGGACAACGGAGTCCACTGAGCACATGGGGCAGAATGTATCAAA
GACCAGCGAGCTAAATCAGTTTTCTTTGTCCCCGAGGAATCAAACACAACTTTTAGATGCTCAC
AAGACTGACAGCTACAACAAGGAATACACTTTAGATCAAAATGAAGCCTTACAACACAGAGAGG
AAAATTCAACTCATACACAACTTGGAGATAAAGAAAAAACATTAATGACAAAACCCCAAATACC
ACATCAAATTGTGGAAAATTGTATTACGGATAAGGAAGAAAATGATGTAGAAAAAAAACTTTCA
AAAACAGAAACTTGTGATTCCTCTCTCATTCCTCAAACACGATCCAAGAACAACCTATCATTTA
TGAAGACAAATTCAATTCCATACCAAAATAGAATAGAACTTCCCAAGGATATCAGTACTTCTCC
TGTTAGTAGTCAAGCCATTTGGCACCTAACCAATAGTAGCGAAAAAGGAATTGACAGCACAAAT
GCATTGCCCAGAAATGACGGCACTGAAGCACTAGAGATAAAAATAGTAGGGAAAGAAGAGAAAA
ATATGCTTGATGAAAGCAAGACAGATTCTAGTATGTTAATTCAGATCACACAAATGACCTTAAA
AGGCACCACAAAAGAAAGGCAGCAAACTTGGGAAAATGGAACAAGTGTAAAACATGTATTATAT
GATGCAAGCTCTGCCGAGGAGACCATTACAGCTAAAGATTTAAGTATCACAAGTTCCCATGAAA
CCCAAAATAGAATACTTTGCAGTGAAGTAGATCCTGAAATTAACAGTAATATGCATAATTTTAG
AGAATTTCAAAATATTCAACCAGATAAAGATAGTGCATACAAAGAAGGCGCAATGACAGTGGAG
ACACATGAAGCACTTTCCTTCTTACCAGGGTTAAAAGACAGTTTTGAGGCAGAAAATGAAGTGT
TTTTAGTTCCTAGCAGAATAAATGAAGCTGAAAACTCTGCTCCAAAACCTGCACTGTATCCACC
ATCTGCTGAATATGCTACTACATCACCTTTAGAAGCAGAATAAAGTGAAGAAAATAACTCAAAT
AGTAATTATTTTCTACTTTAGCTTTCTTCAAGAGGACACACAAACACCCCTTAGCCTTTGCATG
CATTACAAATGCATCATTTTGGAGGATAACGATGTCCTCAGTAGCTCTTTGTTATCAATAAAAT
AAAACCACAGAGTTGAATATATGACAAAAATCAAAGATGGAGTCATATGATACGTCTGACACAA
TTAACTGAGTATGCTTCTCTAAGGAATGAAAAACCAAGTAAG
hide sequence
|
| RefSeq Acc Id: |
XP_007976481 ⟸ XM_007978290 |
| - UniProtKB: |
A0A0D9S6Z6 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: |
ENSCSAP00000016635 ⟸ ENSCSAT00000017150 |
Additional Information
Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2020-12-08 |
LRRC53 |
leucine rich repeat containing 53 |
LOC103224611 |
leucine-rich repeat-containing protein 53 |
Symbol and/or name change |
5135510 |
APPROVED |
|
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