SELENOI (selenoprotein I) - Rat Genome Database

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Gene: SELENOI (selenoprotein I) Chlorocebus sabaeus
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Symbol: SELENOI
Name: selenoprotein I
RGD ID: 18405405
Description: ENCODES a protein that exhibits ethanolaminephosphotransferase activity (inferred); phosphotransferase activity, for other substituted phosphate groups (inferred); transferase activity (inferred); INVOLVED IN ether lipid biosynthetic process (inferred); glycerophospholipid biosynthetic process (inferred); myelination (inferred); ASSOCIATED WITH hereditary spastic paraplegia 81 (ortholog); mitochondrial trifunctional protein deficiency (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EPT1; ethanolaminephosphotransferase 1; ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,254,933 - 81,303,584 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,258,491 - 81,303,618 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604530,853,496 - 30,902,600 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SELENOI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,254,933 - 81,303,584 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,258,491 - 81,303,618 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604530,853,496 - 30,902,600 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SELENOI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,346,143 - 26,395,885 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,308,547 - 26,395,885 (+)EnsemblGRCh38hg38GRCh38
GRCh37226,569,011 - 26,618,753 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,422,458 - 26,472,263 (+)NCBINCBI36Build 36hg18NCBI36
Celera226,412,508 - 26,462,300 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,308,204 - 26,357,625 (+)NCBIHuRef
CHM1_1226,498,915 - 26,548,999 (+)NCBICHM1_1
T2T-CHM13v2.0226,384,823 - 26,434,484 (+)NCBIT2T-CHM13v2.0
Selenoi
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,437,579 - 30,477,428 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,437,579 - 30,477,425 (+)EnsemblGRCm39 Ensembl
GRCm38530,232,581 - 30,272,430 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,232,581 - 30,272,427 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,559,158 - 30,598,976 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,563,469 - 30,599,096 (+)NCBIMGSCv36mm8
Celera527,750,972 - 27,791,466 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.22NCBI
Selenoi
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,792,972 - 31,831,170 (-)NCBIGRCr8
mRatBN7.2626,073,127 - 26,111,326 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl626,072,648 - 26,111,314 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,365,769 - 26,403,967 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,681,651 - 26,719,849 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0626,161,058 - 26,199,262 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,473,748 - 27,512,287 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,473,748 - 27,512,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0637,285,872 - 37,323,978 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4626,058,654 - 26,096,822 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera625,550,258 - 25,588,218 (-)NCBICelera
Cytogenetic Map6q14NCBI
Selenoi
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,369,479 - 8,408,659 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,369,499 - 8,410,628 (+)NCBIChiLan1.0ChiLan1.0
SELENOI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212100,120,518 - 100,169,782 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A100,124,486 - 100,173,725 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,344,856 - 26,393,359 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,437,502 - 26,485,896 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,437,503 - 26,479,093 (+)Ensemblpanpan1.1panPan2
SELENOI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,431,176 - 20,469,694 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,431,176 - 20,517,753 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,326,279 - 20,364,573 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01720,753,374 - 20,791,716 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1720,753,370 - 20,793,185 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,440,157 - 20,478,444 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,451,132 - 20,489,437 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,497,474 - 20,535,814 (+)NCBIUU_Cfam_GSD_1.0
Selenoi
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629264,740,115 - 64,787,120 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364936,055,277 - 6,099,458 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364936,052,094 - 6,099,430 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,628,744 - 112,671,078 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,632,985 - 112,671,127 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,570,474 - 119,608,570 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Selenoi
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,487,384 - 8,526,163 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,487,408 - 8,532,910 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SELENOI
783 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000006823   ⟹   ENSCSAP00000005019
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1481,258,491 - 81,303,618 (-)Ensembl
RefSeq Acc Id: XM_007971243   ⟹   XP_007969434
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11481,256,933 - 81,303,584 (-)NCBI
Vero_WHO_p1.0NW_02366604530,853,496 - 30,902,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038006672   ⟹   XP_037862600
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604530,853,558 - 30,902,600 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007969434 (Get FASTA)   NCBI Sequence Viewer  
  XP_037862600 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005019.1
RefSeq Acc Id: XP_007969434   ⟸   XM_007971243
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R8T0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000005019   ⟸   ENSCSAT00000006823
RefSeq Acc Id: XP_037862600   ⟸   XM_038006672
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R8T0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008763 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006823.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1760 UniProtKB/TrEMBL
InterPro CDP-OH_P_trans UniProtKB/TrEMBL
  CDP-OH_PTrfase_TM_dom UniProtKB/TrEMBL
  CDP_ALCOHOL_P_TRANSF_CS UniProtKB/TrEMBL
  CHOPT UniProtKB/TrEMBL
NCBI Gene SELENOI ENTREZGENE
PANTHER ETHANOLAMINEPHOSPHOTRANSFERASE 1 UniProtKB/TrEMBL
  PTHR10414 UniProtKB/TrEMBL
Pfam CDP-OH_P_transf UniProtKB/TrEMBL
PIRSF CHOPT UniProtKB/TrEMBL
PROSITE CDP_ALCOHOL_P_TRANSF UniProtKB/TrEMBL
UniProt A0A0D9R8T0 ENTREZGENE, UniProtKB/TrEMBL