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Gene: LOC103219013 (dnaJ homolog subfamily C member 25) Chlorocebus sabaeus

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Symbol:

LOC103219013 (Ensembl: DNAJC25)

Name:

dnaJ homolog subfamily C member 25 (Ensembl:DnaJ heat shock protein family (Hsp40) member C25)

RGD ID:

18387222

Description:

INVOLVED IN protein folding (inferred); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DnaJ heat shock protein family (Hsp40) member C25; DNAJC25

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	27,853,738 - 27,874,545 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	27,854,871 - 27,874,432 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	14,907,907 - 14,928,675 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein folding (IEA)

Cellular Component

endoplasmic reticulum membrane (IEA)

membrane (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LOC103219013
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	27,853,738 - 27,874,545 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	27,854,871 - 27,874,432 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	14,907,907 - 14,928,675 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

DNAJC25
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	111,631,334 - 111,654,345 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	111,631,334 - 111,654,351 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	114,393,614 - 114,416,625 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	113,433,453 - 113,456,452 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	84,892,702 - 84,915,694 (+)	NCBI		Celera
Cytogenetic Map	9	q31.3	NCBI
HuRef	9	83,992,211 - 84,015,151 (+)	NCBI		HuRef
CHM1_1	9	114,540,098 - 114,563,025 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	123,802,699 - 123,825,706 (+)	NCBI		T2T-CHM13v2.0

Dnajc25
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	58,995,215 - 59,025,573 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	58,995,062 - 59,025,573 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	58,994,799 - 59,025,573 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	58,995,062 - 59,025,573 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	59,016,065 - 59,036,270 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	59,097,553 - 59,117,046 (+)	NCBI		MGSCv36	mm8
Celera	4	58,916,366 - 58,936,424 (+)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	32.36	NCBI

Dnajc25
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	78,620,608 - 78,642,921 (+)	NCBI		GRCr8
mRatBN7.2	5	73,825,565 - 73,847,878 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	73,825,565 - 73,845,433 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	75,726,822 - 75,746,699 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	77,548,442 - 77,568,319 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	77,520,592 - 77,540,471 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	76,150,840 - 76,171,424 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	76,150,840 - 76,171,423 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	80,295,287 - 80,315,201 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	77,052,810 - 77,072,780 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	72,647,848 - 72,667,717 (+)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

DNAJC25
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	27,776,610 - 27,796,075 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	27,774,026 - 27,798,407 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	82,764,623 - 82,784,058 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	110,926,351 - 110,946,346 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	110,926,351 - 110,946,346 (+)	Ensembl	panpan1.1		panPan2

DNAJC25
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	66,234,583 - 66,261,153 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	66,234,583 - 66,261,153 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	64,645,331 - 64,671,899 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	67,367,623 - 67,394,819 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	67,367,623 - 67,394,819 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	65,884,617 - 65,911,582 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	65,908,335 - 65,935,106 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	66,598,328 - 66,625,094 (+)	NCBI		UU_Cfam_GSD_1.0

DNAJC25
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	252,426,444 - 252,447,095 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	252,426,357 - 252,445,622 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	283,222,179 - 283,226,635 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Dnajc25
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	23,346,352 - 23,374,068 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	23,348,575 - 23,374,093 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LOC103219013
456 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007968424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000010275 ⟹ ENSCSAP00000008371

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	12	27,854,871 - 27,874,432 (-)	Ensembl

RefSeq Acc Id:

XM_007968424 ⟹ XP_007966615

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	12	27,853,738 - 27,874,545 (-)	NCBI
Vero_WHO_p1.0	NW_023666035	14,907,907 - 14,928,675 (+)	NCBI

Sequence:

show sequence

TGCGCGGAGGCGCCGGCTGCTGACGTGGAACTGGGGGCCAGGCCGGCCGAGCCGGGCCCGCGGC
GGAGTGCTGCAGAATCTCTGGGGTGGCAGATCCGCCAGCGAGGCTGGGGATGGGGGCGCCGCTG
CTCTCTCCCGGTTGGGCGACTGGGGCTGCCGGTCGGCGCTCGTATGTGCTGCTGGCGCCCTTCC
TGCTGACGCTGCTGCTAGTGCGGCCCTCGGGGGCCCTGGTGGAGGGGCTCTACTGCGGCACGCG
GGACTGCTACGAGGTGCTGGGCGTGAGCCGCGCGGCGGGCAAAGCGGAGATCGCGCGGGCCTAC
CGCCAGCTGGCCCGGCGCTACCACCCCGACCGCTACCGGCCGGAGCCCGGCGACGAGGGCCCTG
GGCGGACGCCGCAGAGCGCCGAGGAGGCTTTCCTGCTGGTGGCAACCGCCTATGAGACGCTCAA
GGATGAGGAAACACGAAAAGATTATGATTACATGCTGGACCATCCAGAAGAGTACTACAGCCAT
TACTACCACTACTATAGCAGGCGCTTGGCCCCTAAGGTGGATGTTAGAGTCGTGATTTTGGTCA
GTGTGTGTGCTATTTCAGTGTTTCAGTTTTTCAGCTGGTGGAATAGCTACAATAAGGCAATCAG
CTACCTAGCCACAGTGCCCAAGTACCGTATCCAGGCTACAGAGATTGCCAAGCAGCAGGGACTG
CTCAAAAAAGCCAAAGAAAAAGGCAAAAACAAAAAGTCCAAAGAGGAAATTCGTGACGAGGAGG
AGAACATCATAAAGAACATTATAAAAAGTAAAATAGATATAAAGGGGGGCTATCAGAAACCCCA
AATCTGTGATCTTCTCCTGTTTCAAATTATCTTAGCTCCTTTTCACCTATGCTCATATATAGTT
TGGTATTGCCGGTGGATCTATAATTTTAACATCAAAGGCAAAGAATATGGAGAGGAAGAGAGAT
TGTACATTATACGTAAATCTATGAAGATGTCAAAGTCTCAATTTGATAGTCTAGAAGATCATCA
GAAAGAAACTTTTCTTAAACGAGAGCTCTGGATCAAGGAGAATTATGAGGTCTACAAGCAAGAA
CAAGAGGAGGAATTAAAGAAAAAGTTGGCAAATGACCCCAGATGGAAGAGATACAGGAGATGGA
TGAAGAATGAAGGGCCTGGGCGGTTAACATTTGTGGATGACTGAAGATTGATGGAATGCTACTA
TGCCAAACCTTAATTGTGATATTATTTTCATAACTGAATTATTTTAGAAATGTATCAATTGACT
GCTGCTCAGCAGTAACTAAAATTCCTCAAGTATTTGATTAAACAGAATAATGTCGAAATTTAAA
CCTTCCCTTAAAACTTTATACATAAGACATTTATGATTGTTCAATTTTTATAATCTATTTGTGG
ATTTTGTTAAAAGATTTCACATGAAGATTTATTAGTTGCCATTTAAAATTTTTATATGTTTAGT
TAAAAGATTTGACATGAAAATTTATTAGATACCATTTAAACGTTTTATGTGTTATGTGTTTATT
CTTTGAGAGTGTTTCCTTACTCTTTGTAATAGTGCTACATTTTTCTGTTTTCATGGCCTCTGTA
TTTTCACAAAACATCAAAAACAGCATTTAATTATATTATCATGAGTGTTTTTCTGGACACAAAC
TTCAGTAGAATGACCTAACAAGTCGTTTTCATTACAGTCATTATAGGATTGAAATACGTTCAAA
ATAACCTCTAGGAAAGTCTTCTGCTAGAATATCCCCCCTCTATTCATTATAATATTCTTTGTTT
TTAAAGCCAGTCAAATATAATAGTCTTAATAAGATCAGAAACTCTCCAGGAGAGTGAGTCTACC
CTCATGTCCTTGTAGGATGATCTTGATTATAGTCTCATTATAGGACTATAACTGTATTCTCAAC
ATTTCTCCAGAAAGGACCTTGTAAAAAGGTCTTTTGTACCACAGTATTGGTTTTTTCCCCCTCT
CTCTTCACTTAAAAAAAAAAAAAATAGCAGGCAGAAATAGCGTATTGAAAAGTTGTTCATCTAT
TATGAAGTCCTTGAGTGGTGAAAAATCCACTGGACGTGAGAACATTTCTGTGCATTTAAACCAG
AAACGAGGTACATGGCTGTGTGCTCTTCTATCAACCAATGAAATGTAAGTGTTTTTACATGTGT
GGCAGTGCTAGTAAATAACACATTATTTGACTTAATCAGGCATGATACTGCACCAAAGTATCAA
AGTATCGGTACATATTCATGGTAGTAAGTCAGTACCCCTGTTAAAGGATTTATCCCATTGCTTC
ATATTAATAAAATGGTTACACTATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007966615	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000008371.1

RefSeq Acc Id:	XP_007966615 ⟸ XM_007968424
- UniProtKB:	A0A0D9RID2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000008371 ⟸ ENSCSAT00000010275

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000012197	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000010275.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.110	UniProtKB/TrEMBL
InterPro	DnaJ_domain	UniProtKB/TrEMBL
	DNAJC25-like	UniProtKB/TrEMBL
	J_dom_sf	UniProtKB/TrEMBL
KEGG Report	csab:103219013	UniProtKB/TrEMBL
NCBI Gene	DNAJC25	ENTREZGENE
PANTHER	DNAJ HOMOLOG SUBFAMILY C MEMBER 25	UniProtKB/TrEMBL
	PTHR44176	UniProtKB/TrEMBL
Pfam	DnaJ	UniProtKB/TrEMBL
PRINTS	JDOMAIN	UniProtKB/TrEMBL
PROSITE	DNAJ_2	UniProtKB/TrEMBL
SMART	DnaJ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46565	UniProtKB/TrEMBL
UniProt	A0A0D9RID2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-12-08	LOC103219013	dnaJ homolog subfamily C member 25	DNAJC25	DnaJ heat shock protein family (Hsp40) member C25	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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