LOC103248735 (olfactory receptor 8A1)

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Gene: LOC103248735 (olfactory receptor 8A1) Chlorocebus sabaeus

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Symbol:

LOC103248735 (Ensembl: OR8A1)

Name:

olfactory receptor 8A1 (Ensembl:olfactory receptor family 8 subfamily A member 1)

RGD ID:

18368246

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN axon guidance (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	115,716,235 - 115,717,942 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	115,716,545 - 115,717,525 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	10,398,408 - 10,399,617 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 11 partial duplication syndrome (ISO)

Dwarfism (ISO)

holoprosencephaly 11 (ISO)

Jacobsen Syndrome (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (ISO)

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC103248735
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	115,716,235 - 115,717,942 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	115,716,545 - 115,717,525 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	10,398,408 - 10,399,617 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

OR8A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	124,569,997 - 124,571,374 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	124,566,660 - 124,582,942 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	124,439,893 - 124,441,270 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	123,945,175 - 123,946,155 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	123,945,174 - 123,946,155	NCBI
Celera	11	121,600,142 - 121,601,122 (+)	NCBI		Celera
Cytogenetic Map	11	q24.2	NCBI
HuRef	11	120,382,443 - 120,383,423 (+)	NCBI		HuRef
CHM1_1	11	124,326,082 - 124,327,062 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	124,598,669 - 124,600,046 (+)	NCBI		T2T-CHM13v2.0

Or8a1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	37,622,644 - 37,623,576 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	37,620,260 - 37,627,546 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	37,711,348 - 37,712,280 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	37,708,964 - 37,716,250 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	37,518,933 - 37,519,865 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	37,461,019 - 37,461,948 (-)	NCBI		MGSCv36	mm8
Celera	9	34,929,399 - 34,930,331 (-)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	20.8	NCBI

Or8a1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	45,623,650 - 45,624,579 (-)	NCBI		GRCr8
mRatBN7.2	8	37,434,903 - 37,435,832 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	37,434,551 - 37,439,746 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	41,444,041 - 41,444,970 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	39,727,083 - 39,728,012 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	37,589,976 - 37,590,905 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	40,191,902 - 40,192,831 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	40,191,902 - 40,192,831 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	40,192,726 - 40,193,655 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	38,972,699 - 38,973,628 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	38,981,464 - 38,982,394 (-)	NCBI
Celera	8	37,022,952 - 37,023,881 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

LOC100992664
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	125,263,798 - 125,265,682 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	126,368,719 - 126,370,603 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	119,395,269 - 119,396,731 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	123,310,838 - 123,312,037 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	123,310,904 - 123,311,884 (+)	Ensembl	panpan1.1		panPan2

OR8A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	9,826,884 - 9,827,816 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	9,826,884 - 9,827,813 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	9,871,707 - 9,872,636 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	9,766,391 - 9,767,320 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	9,766,391 - 9,767,320 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	9,838,381 - 9,839,310 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	9,808,920 - 9,809,849 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	9,845,598 - 9,846,527 (-)	NCBI		UU_Cfam_GSD_1.0

LOC100524268
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	9	51,778,403 - 51,779,381 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	57,295,669 - 57,296,658 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC101717337
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624927	566,206 - 567,135 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624927	566,203 - 567,135 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system
21	1	17	18	18	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008021334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000017950 ⟹ ENSCSAP00000017421

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	1	115,716,545 - 115,717,525 (+)	Ensembl

RefSeq Acc Id:

XM_008021334 ⟹ XP_008019525

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	115,716,235 - 115,717,942 (+)	NCBI
Vero_WHO_p1.0	NW_023666043	10,398,408 - 10,399,617 (-)	NCBI

Sequence:

show sequence

TGAGAATTTGCATCTCTAAAAAACTCCAGGTAATATCAGTGCTGCTGGTCCAGGGACTACCCTT
TAAGAAACACTGCCCCAGGATACTTTAGAAAAATGTGCATGGTAAAAGATCCAGACCTTGGCCT
GCTTTCCTCCCATCTTCATGATCTCTGAAACACTCAGGCTGGTCTTCCTGCAAAGAAGACCAGC
AAATAGCAGGAGGAGGGGAGGAGGGCAGGGAGGAAGGATCAGCAGAGAGCCCAGGATGTTTCAC
TAGCACCAAAGGCTCAAGACTAGCTTCCCCAAGCCATCCAGGATTAGCCTTTTAATGGGGTTCT
TGTCTCCCATGCATCCCTGCAGGCCTCCTGCCCAGAGAAGGATGGCTGCAGGAAATCACTCTAC
AGTGACAGAGTTCATTCTCAGGGGATTAACGAAGAGAGAAGACCTCCAGCTCCCCCTCTTTCTC
CTCTTCCTCGGGATCTACTTGGTCACCATGGTGGGGAACCTGGGCATGATCACTCTGATTCGTC
TGAACTCTCAGCTTCACACCCCCATGTACTACTTCCTCAGCAATCTGTCACTCGTGGATTTCTG
CTACTCCTCCGTCATTACCCCAAAAATGCTGGTGAACTTTGTGTCAGAGAAAAACATCATCTCC
TACGCAGGGTGCATGTCACAGCTCTACTTCTTCCTTGTTTTTGTCATTGCTGAGTGTTACATGC
TGACAGTGATGGCCTACGACCGCTATGTTGCCATCTGCCACCCTTTGCTTTACAACATCATTAT
GTCTCATCACACCTGCTCCCTGCTGGTGGCTGTGGTCTACGCCATGGGACTCATTGGCTCCACA
ATAGAAACTGGCCTCATGTTAAAACTGCCCTATTGTGAGCGCCTCATCAGTCACTACTTTTGTG
ACATCCTCCCTCTCATGAAGCTGTCCTGCTCTAGCACCTATGATGTTGAGATGGCAGTCTTCTT
TTTGGCTGGATTCGACATCATAGTCACAAGCTTAATGGTTCTTGTTTCTTACACCTTCATTCTC
TCCAGCATCCTCAGCATCAGCACCACAGAGGGTAGATCCAAAGCCTTCAGCACCTGCAGCTCCC
ACCTTGCAGCTGTGGGAATGTTCTACGGATCAACTGCATTCATGTACTTAAAACCCTCCACAGT
CAGTTCCTTGGCCCAGGAAAATGTGGCCTCTGTGTTCTACACCACCGTAATCCCCATGCTGAAT
CCCCTAATCTACAGCCTGAGAAACAAGGAAGTAAAGGCTGCCATGCAGAAAACACTGAGGAGTA
AACTGTTTTGATGCAAATGTTATTGTTCCCTTTCAATTTAGTAGTAATTGTTATAAATACTAGA
CGGACAGCTTCTGAATGCTGGCCAGCCGTGAATGGAAAATAATCACTTCTCCACATGGCTGAGT
GGATGCCATTTTTCCTTCTCTCCCTCTTTTTCCACTACTGATTGAAACCAGCCAACTTCAAGTT
CAGGTTTTCTTTCACTTGAGATCCATCCCTCTATCCCAAGCCCTTTAATAAATGTTTCCTACCT
TAATTGTAATTTAACTTAAATGCTAAACTTTCAACATTGAGTTTTAGGGTCATTCATGGTCTTA
TTACCTTCTACACAGAAAATATTACTCAGTCTAATTTTTTTCTTTTTTTTTTTCTTTTTGGTGA
CAGAGTCTTACTCTGTAGCTGAGGCTGGAGTGCAGTAGCACAAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_008019525	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000017421.1

RefSeq Acc Id:	XP_008019525 ⟸ XM_008021334
- UniProtKB:	A0A0D9S982 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000017421 ⟸ ENSCSAT00000017950

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000000585	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000017950.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	csab:103248735	UniProtKB/TrEMBL
NCBI Gene	LOC103248735	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 8A1	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A0D9S982	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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