SYT17 (synaptotagmin 17) - Rat Genome Database

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Gene: SYT17 (synaptotagmin 17) Chlorocebus sabaeus
Analyze
Symbol: SYT17
Name: synaptotagmin 17
RGD ID: 18360823
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent phospholipid binding (inferred); clathrin binding (inferred); INVOLVED IN calcium-ion regulated exocytosis (inferred); cell differentiation (inferred); positive regulation of dendrite extension (inferred); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptotagmin-17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1517,456,556 - 17,568,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl517,461,723 - 17,550,343 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,587 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SYT17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1517,456,556 - 17,568,102 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl517,461,723 - 17,550,343 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,587 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SYT17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381619,167,834 - 19,268,332 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1619,167,971 - 19,268,332 (+)EnsemblGRCh38hg38GRCh38
GRCh371619,179,156 - 19,279,654 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361619,087,139 - 19,186,055 (+)NCBINCBI36Build 36hg18NCBI36
Build 341619,087,138 - 19,186,055NCBI
Celera1618,327,505 - 18,426,429 (+)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1617,717,045 - 17,815,730 (+)NCBIHuRef
CHM1_11619,266,902 - 19,365,840 (+)NCBICHM1_1
T2T-CHM13v2.01619,098,689 - 19,198,945 (+)NCBIT2T-CHM13v2.0
Syt17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397117,979,936 - 118,048,120 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7117,979,940 - 118,047,445 (-)EnsemblGRCm39 Ensembl
GRCm387118,380,713 - 118,448,583 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7118,380,717 - 118,448,222 (-)EnsemblGRCm38mm10GRCm38
MGSCv377125,525,370 - 125,587,066 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367118,173,005 - 118,234,701 (-)NCBIMGSCv36mm8
MGSCv367108,023,239 - 108,089,786 (-)NCBIMGSCv36mm8
Celera7118,323,938 - 118,394,177 (-)NCBICelera
Cytogenetic Map7F1NCBI
cM Map763.44NCBI
Syt17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81182,129,491 - 182,195,827 (-)NCBIGRCr8
mRatBN7.21172,695,275 - 172,761,906 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1172,696,120 - 172,761,960 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1181,007,793 - 181,074,073 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01188,194,108 - 188,260,382 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,923,898 - 180,990,174 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,034,614 - 188,101,590 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,034,495 - 188,101,566 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01194,982,169 - 195,048,435 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,599,608 - 176,666,482 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11176,738,853 - 176,805,728 (-)NCBI
Celera1170,475,720 - 170,537,954 (-)NCBICelera
Cytogenetic Map1q35NCBI
Syt17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554422,843,088 - 2,921,788 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554422,843,143 - 2,921,627 (-)NCBIChiLan1.0ChiLan1.0
SYT17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21820,432,956 - 20,532,883 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11624,956,713 - 25,056,804 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01619,040,859 - 19,140,999 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11619,273,202 - 19,372,655 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1619,273,202 - 19,372,655 (+)Ensemblpanpan1.1panPan2
SYT17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1626,004,113 - 26,076,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha627,362,444 - 27,437,826 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0626,155,347 - 26,230,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl626,155,492 - 26,257,460 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1625,955,678 - 26,031,052 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0625,849,907 - 25,925,150 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0626,239,659 - 26,315,151 (+)NCBIUU_Cfam_GSD_1.0
Syt17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344116,805,353 - 116,870,985 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365014,903,211 - 4,959,597 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365014,903,220 - 4,958,667 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl326,447,342 - 26,548,657 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1326,447,303 - 26,548,362 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2327,190,580 - 27,267,955 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Syt17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247822,512,174 - 2,593,877 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247822,459,992 - 2,594,007 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 17 33 33 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007986801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007986826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037989801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037989802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037989803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037989804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037989805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037989806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037989808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037989809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000005874   ⟹   ENSCSAP00000004089
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl517,461,723 - 17,550,343 (+)Ensembl
RefSeq Acc Id: XM_007986801   ⟹   XP_007984992
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1517,460,227 - 17,550,107 (+)NCBI
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,265 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007986813   ⟹   XP_007985004
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1517,456,556 - 17,550,107 (+)NCBI
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,587 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007986818   ⟹   XP_007985009
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1517,460,227 - 17,528,618 (+)NCBI
Vero_WHO_p1.0NW_02366606812,401,943 - 12,474,265 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007986826   ⟹   XP_007985017
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1517,456,557 - 17,550,107 (+)NCBI
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,371 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037989801   ⟹   XP_037845729
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,587 (-)NCBI
RefSeq Acc Id: XM_037989802   ⟹   XP_037845730
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,265 (-)NCBI
RefSeq Acc Id: XM_037989803   ⟹   XP_037845731
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,587 (-)NCBI
RefSeq Acc Id: XM_037989804   ⟹   XP_037845732
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606812,385,468 - 12,474,265 (-)NCBI
RefSeq Acc Id: XM_037989805   ⟹   XP_037845733
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,463 (-)NCBI
RefSeq Acc Id: XM_037989806   ⟹   XP_037845734
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,283 (-)NCBI
RefSeq Acc Id: XM_037989808   ⟹   XP_037845736
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606812,380,602 - 12,470,181 (-)NCBI
RefSeq Acc Id: XM_037989809   ⟹   XP_037845737
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606812,380,602 - 12,474,540 (-)NCBI
RefSeq Acc Id: XP_007985004   ⟸   XM_007986813
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007985017   ⟸   XM_007986826
- Peptide Label: isoform X8
- UniProtKB: A0A0D9R650 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007984992   ⟸   XM_007986801
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007985009   ⟸   XM_007986818
- Peptide Label: isoform X6
Ensembl Acc Id: ENSCSAP00000004089   ⟸   ENSCSAT00000005874
RefSeq Acc Id: XP_037845731   ⟸   XM_037989803
- Peptide Label: isoform X5
RefSeq Acc Id: XP_037845729   ⟸   XM_037989801
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037845737   ⟸   XM_037989809
- Peptide Label: isoform X8
- UniProtKB: A0A0D9R650 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037845733   ⟸   XM_037989805
- Peptide Label: isoform X8
- UniProtKB: A0A0D9R650 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037845734   ⟸   XM_037989806
- Peptide Label: isoform X8
- UniProtKB: A0A0D9R650 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037845730   ⟸   XM_037989802
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037845736   ⟸   XM_037989808
- Peptide Label: isoform X8
- UniProtKB: A0A0D9R650 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037845732   ⟸   XM_037989804
- Peptide Label: isoform X7


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007827 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005874.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/TrEMBL
  Synaptotagmin-15/17_C2A UniProtKB/TrEMBL
  SYT17 UniProtKB/TrEMBL
NCBI Gene SYT17 ENTREZGENE
PANTHER PTHR10024:SF348 UniProtKB/TrEMBL
  SYNAPTOTAGMIN UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PRINTS SYNAPTOTAGMN UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A0D9R650 ENTREZGENE, UniProtKB/TrEMBL