MYRF (myelin regulatory factor) - Rat Genome Database

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Gene: MYRF (myelin regulatory factor) Chlorocebus sabaeus
Analyze
Symbol: MYRF
Name: myelin regulatory factor
RGD ID: 18354801
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of oligodendrocyte differentiation (ortholog); response to cocaine (ortholog); response to immobilization stress (ortholog); ASSOCIATED WITH Cardiac-Urogenital Syndrome (ortholog); cerebral infarction (ortholog); congenital diaphragmatic hernia (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,066,277 - 12,103,091 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MYRF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,066,277 - 12,103,091 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MYRF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,752,636 - 61,788,518 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,752,636 - 61,788,518 (+)EnsemblGRCh38hg38GRCh38
GRCh371161,520,108 - 61,555,990 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,279,437 - 61,312,565 (+)NCBINCBI36Build 36hg18NCBI36
Build 341161,279,436 - 61,312,565NCBI
Celera1158,855,535 - 58,891,401 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1157,848,377 - 57,884,223 (+)NCBIHuRef
CHM1_11161,403,340 - 61,439,204 (+)NCBICHM1_1
T2T-CHM13v2.01161,741,556 - 61,777,435 (+)NCBIT2T-CHM13v2.0
Myrf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,185,635 - 10,218,134 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,185,636 - 10,218,112 (-)EnsemblGRCm39 Ensembl
GRCm381910,208,271 - 10,240,777 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,208,272 - 10,240,748 (-)EnsemblGRCm38mm10GRCm38
MGSCv371910,282,761 - 10,315,238 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361910,275,316 - 10,307,793 (-)NCBIMGSCv36mm8
Celera1910,904,189 - 10,936,740 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map196.54NCBI
Myrf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,279,057 - 216,311,155 (-)NCBIGRCr8
mRatBN7.21206,854,175 - 206,886,276 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1206,854,175 - 206,886,157 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,232,584 - 215,264,503 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,287,795 - 222,319,653 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,982,795 - 215,014,652 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01226,260,558 - 226,292,650 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,260,558 - 226,292,480 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01233,205,242 - 233,237,579 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,699,254 - 212,726,526 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11212,857,689 - 212,887,553 (-)NCBI
Celera1204,350,584 - 204,382,768 (-)NCBICelera
Cytogenetic Map1q43NCBI
Myrf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,927,698 - 5,942,242 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,927,103 - 5,949,289 (-)NCBIChiLan1.0ChiLan1.0
MYRF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2962,920,967 - 62,956,861 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,964,615 - 64,000,503 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01157,052,219 - 57,088,105 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11160,412,780 - 60,448,579 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,412,780 - 60,448,579 (+)Ensemblpanpan1.1panPan2
MYRF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11854,690,073 - 54,723,046 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1854,692,453 - 54,723,085 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1853,264,908 - 53,297,870 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01855,736,923 - 55,769,914 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1855,736,923 - 55,771,756 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11854,797,500 - 54,830,489 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01854,419,143 - 54,452,067 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01855,299,419 - 55,332,436 (-)NCBIUU_Cfam_GSD_1.0
Myrf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,222,574 - 11,270,024 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365811,338,762 - 1,367,104 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365811,335,969 - 1,367,104 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYRF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.129,761,230 - 9,795,873 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.229,314,215 - 9,345,474 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Myrf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926617,303 - 636,080 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926615,991 - 636,167 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_007995846   ⟹   XP_007994037
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1112,066,277 - 12,103,081 (-)NCBI
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007995853   ⟹   XP_007994044
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1112,066,277 - 12,103,091 (-)NCBI
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037999211   ⟹   XP_037855139
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBI
RefSeq Acc Id: XM_037999212   ⟹   XP_037855140
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBI
RefSeq Acc Id: XM_037999213   ⟹   XP_037855141
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBI
RefSeq Acc Id: XM_037999214   ⟹   XP_037855142
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBI
RefSeq Acc Id: XM_037999215   ⟹   XP_037855143
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBI
RefSeq Acc Id: XM_037999216   ⟹   XP_037855144
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBI
RefSeq Acc Id: XR_005240586
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038109,440,246 - 109,477,307 (-)NCBI
RefSeq Acc Id: XP_007994044   ⟸   XM_007995853
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R2A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007994037   ⟸   XM_007995846
- Peptide Label: isoform X7
- UniProtKB: A0A0D9R2A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855144   ⟸   XM_037999216
- Peptide Label: isoform X8
- UniProtKB: A0A0D9R2A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855143   ⟸   XM_037999215
- Peptide Label: isoform X6
- UniProtKB: A0A0D9R2A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855142   ⟸   XM_037999214
- Peptide Label: isoform X5
- UniProtKB: A0A0D9R2A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855141   ⟸   XM_037999213
- Peptide Label: isoform X4
- UniProtKB: A0A0D9R2A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855140   ⟸   XM_037999212
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R2A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037855139   ⟸   XM_037999211
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R2A6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006452 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004490.1 UniProtKB/TrEMBL
Gene3D-CATH NDT80 DNA-binding domain UniProtKB/TrEMBL
InterPro MRF-like UniProtKB/TrEMBL
  MYRF_C2 UniProtKB/TrEMBL
  MYRF_ICA UniProtKB/TrEMBL
  NDT80_DNA-bd_dom UniProtKB/TrEMBL
  NDT80_DNA-bd_dom_sf UniProtKB/TrEMBL
  p53-like_TF_DNA-bd_sf UniProtKB/TrEMBL
  S74_ICA UniProtKB/TrEMBL
NCBI Gene MYRF ENTREZGENE
PANTHER MYELIN REGULATORY FACTOR UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam MRF_C2 UniProtKB/TrEMBL
  MYRF_ICA UniProtKB/TrEMBL
  NDT80_PhoG UniProtKB/TrEMBL
  Peptidase_S74 UniProtKB/TrEMBL
PROSITE ICA UniProtKB/TrEMBL
  NDT80 UniProtKB/TrEMBL
Superfamily-SCOP p53-like transcription factors UniProtKB/TrEMBL
UniProt A0A0D9R2A6 ENTREZGENE, UniProtKB/TrEMBL