AC007389.3 (novel transcript) - Rat Genome Database

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Gene: AC007389.3 (novel transcript) Homo sapiens
Analyze
Symbol: AC007389.3
Name: novel transcript
RGD ID: 16569979
Description:
Type: lncrna
Previously known as: AC007389.5
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl265,623,272 - 65,628,424 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:241
Count of miRNA genes:208
Interacting mature miRNAs:219
Transcripts:ENST00000583614
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 2
Low 221 1110 676 101 68 82 1961 218 2224 29 715 574 23 241 1379
Below cutoff 1474 1089 721 295 434 169 2107 1639 1384 126 434 757 131 859 1256 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000629214
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl265,623,272 - 65,628,424 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC007389.3 COSMIC
Ensembl Genes ENSG00000281920 Ensembl
GTEx ENSG00000281920 GTEx
Human Proteome Map AC007389.3 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC007389.3  novel transcript  AC007389.5  novel transcript  Symbol and/or name change 19259462 PROVISIONAL