U2 (U2 spliceosomal RNA) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: U2 (U2 spliceosomal RNA) Homo sapiens
Analyze
Symbol: U2
Name: U2 spliceosomal RNA
RGD ID: 16567481
Description: ENCODES an snrna that exhibits pre-mRNA branch point binding (inferred); INVOLVED IN mRNA branch site recognition (inferred); FOUND IN U2 snRNP (inferred)
Type: snrna
RefSeq Status: MODEL
Previously known as: AC024051.6
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381743,296,425 - 43,296,615 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1743,296,425 - 43,296,615 (-)Ensemblhg38GRCh38
Cytogenetic Map17q21.31NCBI
T2T-CHM13v2.01744,128,523 - 44,128,713 (+)NCBIT2T-CHM13v2.0
JBrowse:





Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
U2HumanmRNA branch site recognition involved_inIEARfam:RF00004150520179 RNAcentralGO_REF:0000115

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
U2HumanU2 snRNP part_ofIEARfam:RF00004150520179 RNAcentralGO_REF:0000115

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
U2Humanpre-mRNA branch point binding enablesIEARfam:RF00004150520179 RNAcentralGO_REF:0000115



U2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381743,296,425 - 43,296,615 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1743,296,425 - 43,296,615 (-)Ensemblhg38GRCh38
Cytogenetic Map17q21.31NCBI
T2T-CHM13v2.01744,128,523 - 44,128,713 (+)NCBIT2T-CHM13v2.0
U2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8733,835,941 - 33,836,131 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl733,835,941 - 33,836,131 (-)EnsemblGRCr8
mRatBN7.2731,949,206 - 31,949,396 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl731,949,206 - 31,949,396 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl738,426,698 - 38,426,888 (-)NCBIrn6Rnor6.0
Cytogenetic Map7q13NCBI

.



alimentary part of gastrointestinal system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
respiratory system
1 1 2 2 2 1 1



Ensembl Acc Id: ENST00000620268
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1743,296,425 - 43,296,615 (-)Ensembl
RefSeq Acc Id: XR_007066016
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381743,296,425 - 43,296,615 (-)NCBI
RefSeq Acc Id: XR_007088041
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01744,128,523 - 44,128,713 (+)NCBI


Database
Acc Id
Source(s)
COSMIC U2 COSMIC
Ensembl Genes ENSG00000275219 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000620268 ENTREZGENE
GTEx ENSG00000275219 GTEx
Human Proteome Map U2 Human Proteome Map
NCBI Gene LOC124904143 ENTREZGENE
RNAcentral URS00006A3E7F RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 U2  U2 spliceosomal RNA  AC024051.6    Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC024051.6    U2  U2 spliceosomal RNA  Symbol and/or name change 19259462 PROVISIONAL