AL138721.1 (ribosomal protein S12 (RPS12) pseudogene) - Rat Genome Database

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Gene: AL138721.1 (ribosomal protein S12 (RPS12) pseudogene) Homo sapiens
Analyze
Symbol: AL138721.1
Name: ribosomal protein S12 (RPS12) pseudogene
RGD ID: 16567015
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl635,070,871 - 35,071,049 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:220
Count of miRNA genes:207
Interacting mature miRNAs:216
Transcripts:ENST00000583622
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 2 2 5 3 1 2
Low 1471 1295 709 124 488 39 3090 1116 1191 61 780 997 89 892 1908 1
Below cutoff 541 984 424 142 463 90 758 718 1326 44 272 215 53 210 600 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000616756
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl635,070,871 - 35,071,049 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL138721.1 COSMIC
Ensembl Genes ENSG00000273870 Ensembl
GTEx ENSG00000273870 GTEx
Human Proteome Map AL138721.1 Human Proteome Map