AC004877.1 (novel transcript, antisense to ZNF862) - Rat Genome Database

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Gene: AC004877.1 (novel transcript, antisense to ZNF862) Homo sapiens
Analyze
Symbol: AC004877.1
Name: novel transcript, antisense to ZNF862
RGD ID: 16566845
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl7149,858,400 - 149,862,492 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:45
Interacting mature miRNAs:45
Transcripts:ENST00000608963
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1
Low 900 149 804 25 239 8 942 690 2682 52 759 657 18 217 791
Below cutoff 1432 2640 756 451 1310 311 3232 1467 1015 296 615 860 144 977 1949 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000608963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7149,858,400 - 149,862,492 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC004877.1 COSMIC
Ensembl Genes ENSG00000273419 Ensembl
GTEx ENSG00000273419 GTEx
Human Proteome Map AC004877.1 Human Proteome Map