AP000553.3 (novel transcript) - Rat Genome Database

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Gene: AP000553.3 (novel transcript) Homo sapiens
Analyze
Symbol: AP000553.3
Name: novel transcript
RGD ID: 16566811
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2221,640,844 - 21,641,284 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:147
Interacting mature miRNAs:150
Transcripts:ENST00000609038
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 585 595 555 39 273 26 806 295 1121 47 769 613 17 280 611
Below cutoff 1352 1219 757 310 563 212 2120 1114 2079 203 479 690 105 693 1244 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000609038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2221,640,844 - 21,641,284 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP000553.3 COSMIC
Ensembl Genes ENSG00000273342 Ensembl
GTEx ENSG00000273342 GTEx
Human Proteome Map AP000553.3 Human Proteome Map