AC107464.2 (novel transcript, antisense to PDE6B) - Rat Genome Database

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Gene: AC107464.2 (novel transcript, antisense to PDE6B) Homo sapiens
Analyze
Symbol: AC107464.2
Name: novel transcript, antisense to PDE6B
RGD ID: 16566622
Description:
Type: lncrna
Previously known as: AC107464.3
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl4661,209 - 661,945 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:72
Interacting mature miRNAs:72
Transcripts:ENST00000609172
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 34 5 773 245 7 2 317 49 185 580
Low 2071 1688 494 277 1348 122 2306 1016 3302 293 1157 896 156 716 1240 1
Below cutoff 201 1098 392 288 256 281 1411 755 58 54 52 43 8 461 1008 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000609172
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4661,209 - 661,945 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC107464.2 COSMIC
Ensembl Genes ENSG00000272927 Ensembl
GTEx ENSG00000272927 GTEx
Human Proteome Map AC107464.2 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-30 AC107464.2  novel transcript, antisense to PDE6B  AC107464.3  novel transcript, antisense to PDE6B  Symbol and/or name change 19259462 PROVISIONAL