AC090425.3 (novel transcript, antisense to ACTL6A) - Rat Genome Database

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Gene: AC090425.3 (novel transcript, antisense to ACTL6A) Homo sapiens
Analyze
Symbol: AC090425.3
Name: novel transcript, antisense to ACTL6A
RGD ID: 16566610
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl3179,583,262 - 179,583,762 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:85
Interacting mature miRNAs:87
Transcripts:ENST00000608818
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 8 2
Low 1748 962 1205 351 1008 228 2739 991 2865 340 1133 1350 135 672 1642 2
Below cutoff 641 1557 470 238 518 203 1482 1095 817 76 281 236 35 494 1040 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000608818
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3179,583,262 - 179,583,762 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC090425.3 COSMIC
Ensembl Genes ENSG00000272910 Ensembl
GTEx ENSG00000272910 GTEx
Human Proteome Map AC090425.3 Human Proteome Map