AL122035.2 (novel transcript, antisense to MTHFD1) - Rat Genome Database

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Gene: AL122035.2 (novel transcript, antisense to MTHFD1) Homo sapiens
Analyze
Symbol: AL122035.2
Name: novel transcript, antisense to MTHFD1
RGD ID: 16566609
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1464,440,369 - 64,442,238 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:117
Interacting mature miRNAs:119
Transcripts:ENST00000609125
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 7 3 15 9 8 9 11 4 30 8 11 11
Low 2415 2523 1684 589 1523 431 4340 2148 3672 405 1429 1589 170 1204 2776 4
Below cutoff 10 448 24 24 407 24 4 41 6 13 11 8 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000609125
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1464,440,369 - 64,442,238 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL122035.2 COSMIC
Ensembl Genes ENSG00000272909 Ensembl
GTEx ENSG00000272909 GTEx
Human Proteome Map AL122035.2 Human Proteome Map