AC135803.1 (novel transcript) - Rat Genome Database

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Gene: AC135803.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC135803.1
Name: novel transcript
RGD ID: 16566591
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl174,698,769 - 74,699,333 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:81
Interacting mature miRNAs:81
Transcripts:ENST00000608748
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 134 21 99 39 20 39 53 59 86 77 202 32 4 51
Low 2049 1937 1533 523 1047 414 3104 1500 3333 290 1115 1258 114 888 2035 1
Below cutoff 206 658 84 48 459 9 961 541 265 43 98 232 45 263 581 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000608748
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl174,698,769 - 74,699,333 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC135803.1 COSMIC
Ensembl Genes ENSG00000272864 Ensembl
GTEx ENSG00000272864 GTEx
Human Proteome Map AC135803.1 Human Proteome Map