AC144521.1 (novel transcript, sense intronic to SATB1) - Rat Genome Database

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Gene: AC144521.1 (novel transcript, sense intronic to SATB1) Homo sapiens
Analyze
Symbol: AC144521.1
Name: novel transcript, sense intronic to SATB1
RGD ID: 16566414
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl318,408,680 - 18,409,635 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2509
Count of miRNA genes:1048
Interacting mature miRNAs:1275
Transcripts:ENST00000414198, ENST00000425799, ENST00000438418, ENST00000453361, ENST00000456253, ENST00000593444, ENST00000593741, ENST00000595250, ENST00000595388, ENST00000595865, ENST00000596139, ENST00000596152, ENST00000596277, ENST00000596307, ENST00000596850, ENST00000598149, ENST00000598390, ENST00000598498, ENST00000598688, ENST00000598740, ENST00000599762, ENST00000600177, ENST00000607148, ENST00000609327, ENST00000610002
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4 5
Low 1 17 12 2 33 2 10 4 8 2 9 29 4 8
Below cutoff 501 706 542 176 487 97 768 286 719 67 375 540 79 301 475 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000607148
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl318,408,680 - 18,409,635 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC144521.1 COSMIC
Ensembl Genes ENSG00000272477 Ensembl
GTEx ENSG00000272477 GTEx
Human Proteome Map AC144521.1 Human Proteome Map