AL450270.1 (novel transcript) - Rat Genome Database

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Gene: AL450270.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL450270.1
Name: novel transcript
RGD ID: 16566391
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl6133,540,784 - 133,541,174 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:130
Interacting mature miRNAs:132
Transcripts:ENST00000606160
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 7 7 3 6 7
Low 267 523 375 15 73 8 940 1088 905 88 658 405 8 30 890
Below cutoff 839 936 457 81 218 29 930 697 1625 115 343 585 54 367 660

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000606160
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6133,540,784 - 133,541,174 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL450270.1 COSMIC
Ensembl Genes ENSG00000272428 Ensembl
GTEx ENSG00000272428 GTEx
Human Proteome Map AL450270.1 Human Proteome Map