AC091979.2 (novel transcript) - Rat Genome Database

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Gene: AC091979.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC091979.2
Name: novel transcript
RGD ID: 16566242
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5158,464,465 - 158,464,678 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:138
Interacting mature miRNAs:144
Transcripts:ENST00000607514
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 6 3
Low 96 27 37 8 61 7 209 72 37 13 109 31 1 131 54
Below cutoff 393 208 188 45 61 25 600 319 256 33 235 104 20 372 248

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000607514
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5158,464,465 - 158,464,678 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC091979.2 COSMIC
Ensembl Genes ENSG00000272085 Ensembl
GTEx ENSG00000272085 GTEx
Human Proteome Map AC091979.2 Human Proteome Map