LOC124907880 (uncharacterized LOC124907880) - Rat Genome Database

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Gene: LOC124907880 (uncharacterized LOC124907880) Homo sapiens
Analyze
Symbol: LOC124907880 (Ensembl: AC017033.1)
Name: uncharacterized LOC124907880 (Ensembl:novel transcript)
RGD ID: 16566086
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: AC017033.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382120,866,380 - 120,867,402 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2120,866,378 - 120,867,403 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map2q14.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:393
Count of miRNA genes:344
Interacting mature miRNAs:387
Transcripts:ENST00000603720
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
698 1602 1894 1750 3521 903 1286 1 150 308 95 1031 3929 3680 22 3149 504 1340 990 59

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_007087220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC017033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000603720
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2120,866,378 - 120,867,404 (-)Ensembl
RefSeq Acc Id: XR_007087220
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382120,866,380 - 120,867,402 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124907880 COSMIC
Ensembl Genes ENSG00000271709 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000603720 ENTREZGENE
GTEx ENSG00000271709 GTEx
Human Proteome Map LOC124907880 Human Proteome Map
NCBI Gene LOC124907880 ENTREZGENE
RNAcentral URS00005295DD RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124907880  uncharacterized LOC124907880  AC017033.1  novel transcript  Symbol and/or name change 5135510 APPROVED