AL138787.2 (novel transcript, antisense to EIF2C3) - Rat Genome Database

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Gene: AL138787.2 (novel transcript, antisense to EIF2C3) Homo sapiens
Analyze
Symbol: AL138787.2
Name: novel transcript, antisense to EIF2C3
RGD ID: 16566016
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl135,992,109 - 36,013,630 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:184
Interacting mature miRNAs:189
Transcripts:ENST00000466576, ENST00000479395
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 26 1
Low 271 675 364 67 821 57 671 119 280 104 670 567 12 144 458 1
Below cutoff 1751 1706 1133 444 872 313 2692 1174 2205 242 681 888 136 929 1548 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000466576
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl135,992,109 - 36,013,517 (-)Ensembl
RefSeq Acc Id: ENST00000479395
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,009,381 - 36,013,630 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL138787.2 COSMIC
Ensembl Genes ENSG00000271554 Ensembl
GTEx ENSG00000271554 GTEx
Human Proteome Map AL138787.2 Human Proteome Map