AC108676.2 (UBC ubiquitin C, pseudogene) - Rat Genome Database

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Gene: AC108676.2 (UBC ubiquitin C, pseudogene) Homo sapiens
Analyze
Symbol: AC108676.2
Name: UBC ubiquitin C, pseudogene
RGD ID: 16565988
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl3194,471,923 - 194,472,085 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:163
Count of miRNA genes:160
Interacting mature miRNAs:161
Transcripts:ENST00000605225
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 36 96 49 12 116 11 142 12 51 14 69 76 1 47 52 1
Below cutoff 125 320 162 39 123 18 408 85 200 28 98 184 23 162 227

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000605225
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3194,471,923 - 194,472,085 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC108676.2 COSMIC
Ensembl Genes ENSG00000271483 Ensembl
GTEx ENSG00000271483 GTEx
Human Proteome Map AC108676.2 Human Proteome Map