AC011247.2 (cell death-inducing DFFA-like effector c (CIDEC) pseudogene) - Rat Genome Database

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Gene: AC011247.2 (cell death-inducing DFFA-like effector c (CIDEC) pseudogene) Homo sapiens
Analyze
Symbol: AC011247.2
Name: cell death-inducing DFFA-like effector c (CIDEC) pseudogene
RGD ID: 16565974
Description:
Type: transcribed_processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl238,535,258 - 38,536,249 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:546
Count of miRNA genes:424
Interacting mature miRNAs:461
Transcripts:ENST00000603297, ENST00000605062
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1064 30 5 1 31 38 520 53 6 388 8 14 23
Below cutoff 866 1195 722 132 463 73 2033 1002 1932 100 731 585 62 743 1341 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000603297
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl238,535,258 - 38,535,695 (-)Ensembl
RefSeq Acc Id: ENST00000605062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl238,535,568 - 38,536,249 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC011247.2 COSMIC
Ensembl Genes ENSG00000271443 Ensembl
GTEx ENSG00000271443 GTEx
Human Proteome Map AC011247.2 Human Proteome Map